CX289487

Overview
NameCX289487
Unique NameCX289487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-29
Identity = 67/156 (42.95%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F ++ G + +  ++G     VRD+F +A  AAPC++F DE D++  +RG    G  D   + +NQ L E+DG E   G+ V AAT+RPD+LD ALLRPGR DR +    P  R R  ILKV  R++PLA D+D   IA
Sbjct:  195 GTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIA 350          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-29
Identity = 67/156 (42.95%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F ++ G + +  ++G     VRD+F +A  AAPC++F DE D++  +RG    G  D   + +NQ L E+DG E   G+ V AAT+RPD+LD ALLRPGR DR +    P  R R  ILKV  R++PLA D+D   IA
Sbjct:  195 GTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA 350          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-29
Identity = 67/156 (42.95%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F ++ G + +  ++G     VRD+F +A  AAPC++F DE D++  +RG    G  D   + +NQ L E+DG E   G+ V AAT+RPD+LD ALLRPGR DR +    P  R R  ILKV  R++PLA D+D   IA
Sbjct:  195 GTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA 350          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.820e-29
Identity = 69/156 (44.23%), Postives = 90/156 (57.69%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S+ G E +  ++G     VRD+F KA   APC++F DE D++  +RG    G  D   + +NQ LTE+DG E  TG+ V AAT+R D+LD+ALLRPGR DR +  D P  R R +ILKV         DV LE IA
Sbjct:  257 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEILKVHGSNKKFDTDVSLEVIA 412          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.683e-29
Identity = 70/156 (44.87%), Postives = 90/156 (57.69%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S+ G E +  ++G     VRD+F KA   APC++F DE D++  +RG    G  D   + +NQ LTE+DG E  TGV V AAT+R D+LD+ALLRPGR DR +  D P  + R DILKV S        V LE IA
Sbjct:  263 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIA 418          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 4.810e-29
Identity = 69/156 (44.23%), Postives = 91/156 (58.33%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S    E +  ++G     VRD+F KA + APC++F DE D++  +RG    G  D   + +NQ LTE+DG    +GV V AAT+RPD+LD+ALLRPGR DR +  D P    R+ IL+V SR   L  DVD E IA
Sbjct:  296 GTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRIKILQVHSRGKALTKDVDFEKIA 451          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.810e-29
Identity = 71/156 (45.51%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   S  F S+ G E +  ++G     VRD+F KA   APC++F DE D++  +RG    G  D   + +NQ LTE+DG    TGV V AAT+R D+LD+ALLRPGR DR +    P+   RL ILKV S+K  +  DV LE IA
Sbjct:  214 GTGKTLLAKAIAGEASAPFFSISGSEFVEMFVGVGASRVRDLFKKAKEKAPCIVFIDEIDAVGRQRGVGIGGGNDEREQTLNQLLTEMDGFSGDTGVIVVAATNRIDVLDSALLRPGRFDRQIMVSLPNINGRLAILKVHSKKKKIHKDVLLEVIA 369          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.810e-29
Identity = 68/156 (43.59%), Postives = 91/156 (58.33%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S    E +  ++G     VRD+F KA + APC++F DE D++  +RG    G  D   + +NQ LTE+DG    +GV V AAT+RPD+LD+ALLRPGR DR +  D P    R+ ILKV SR   +  DVD E +A
Sbjct:  293 GTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVA 448          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.283e-29
Identity = 69/156 (44.23%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S+ G E +  ++G     VRD+F KA   APC++F DE D++  +RG    G  D   + +NQ LTE+DG E  TGV V AAT+R D+LD+ALLRPGR DR +  D P  R RL IL+V ++   +   V LE IA
Sbjct:  216 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFRGRLAILEVHAKNKKMESKVSLETIA 371          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.283e-29
Identity = 69/156 (44.23%), Postives = 93/156 (59.62%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   S+ F S+ G E +  ++G     VRD+F KA   APC++F DE D++  +RG    G  D   + +NQ LTE+DG E  TGV V AAT+R D+LD+ALLRPGR DR +  D P  + RL IL+V ++   +   V LE IA
Sbjct:  216 GTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFKGRLAILEVHAKNKKMEPKVSLETIA 371          
The following BLAST results are available for this feature:
BLAST of CX289487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
FTSH_SALTI2.159e-2942.95Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_ECOLI2.159e-2942.95Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO572.159e-2942.95Cell division protease ftsH OS=Escherichia coli O1... [more]
FTSH2_ORYSJ2.820e-2944.23Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH3.683e-2944.87Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH_TOBAC4.810e-2944.23Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_CYACA4.810e-2945.51Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH5_ARATH4.810e-2943.59Cell division protease ftsH homolog 5, chloroplast... [more]
FTSH_PORPU6.283e-2944.23Cell division protease ftsH homolog OS=Porphyra pu... [more]
FSTH_PORYE6.283e-2944.23Cell division protease ftsH homolog OS=Porphyra ye... [more]

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Properties
Property NameValue
Genbank descriptionC02013G12SK IF1 Citrus clementina cDNA clone C02013G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289487 ID=CX289487; Name=CX289487; organism=Citrus clementina; type=EST; length=468bp
TGGTTGTGGCAAGACTCACATAGTTGGTGCTGCTGCTGCTGCTTGTTCAT
TACGATTTATATCAGTGAAAGGGCCTGAGCTGTTGAACAAATACATTGGT
GCTTCTGAGCAAGCTGTTCGGGATATATTCTCAAAAGCAACTGCTGCAGC
ACCATGCCTCCTCTTTTTTGATGAATTTGATTCTATTGCCCCAAAGCGAG
GGCATGATAATACTGGAGTGACTGATCGTGTTGTTAATCAGTTTCTGACT
GAGTTAGATGGCGTTGAAGTGTTGACTGGTGTATTTGTGTTTGCTGCAAC
AAGTAGACCGGATCTACTTGATGCTGCCCTGTTAAGACCTGGTAGGCTGG
ATCGCCTTCTCTTCTGTGATTTTCCATCTCCACGTGAGAGGTTGGATATT
CTTAAAGTTATTTCTAGAAAGTTACCATTGGCCGATGATGTTGATTTAGA
AGCCATAGCTCATATGAC
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