CX289487

Overview
NameCX289487
Unique NameCX289487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.205e-29
Identity = 69/156 (44.23%), Postives = 91/156 (58.33%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S+ G E +  ++G      RD+F+KA A +PC++F DE D++   RG    G  D   + +NQ LTE+DG    TGV V AAT+RP++LD+ALLRPGR DR +    P  R R +ILKV SR   L  DV L  IA
Sbjct:  267 GTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEIDAVGRMRGTGIGGGNDEREQTLNQILTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIA 422          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.072e-28
Identity = 69/156 (44.23%), Postives = 91/156 (58.33%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A      F S    E +  ++G     VRD+F KA + APC++F DE D++  +RG    G  D   + +NQ LTE+DG    +GV V AAT+RPD+LD+ALLRPGR DR +  D P    R+ IL+V SR   LA DVD + IA
Sbjct:  296 GTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIA 451          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.072e-28
Identity = 67/156 (42.95%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S+ G E +  ++G     VRD+F KA   +PC++F DE D++  +RG    G  D   + +NQ LTE+DG E  TG+ + AAT+R D+LDAALLRPGR DR +  D P  + RL+IL V +R   L   + LE IA
Sbjct:  216 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVKGRLEILNVHARNKKLDLSISLELIA 371          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.828e-28
Identity = 69/157 (43.95%), Postives = 93/157 (59.24%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAH 463
            G GKT +  A A    + F SV G E +  +IG     VRD+F KA+  APC++F DE D++  +RG    G  D   + +NQ LTE+DG +   GV V  AT+R D+LDAALLRPGR DR +  + P    R+ ILKV +R  PL +DV L  +A+
Sbjct:  229 GTGKTLLAKAIANEADVPFFSVAGSEFVEMFIGIGAARVRDLFKKASENAPCIVFIDEIDAVGRERGAGVGGGNDEREQTLNQLLTEMDGFKENKGVIVVGATNRADILDAALLRPGRFDRQVTVNLPDRLGRVGILKVHARNKPLGEDVSLVQLAN 385          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.828e-28
Identity = 66/156 (42.31%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F ++ G + +  ++G     VRD+F  A  +APC++F DE D++  +RG    G  D   + +NQ L E+DG +   GV + AAT+RPD+LD ALLRPGR DR +    P  R R  ILKV  RK+PL++DVD   IA
Sbjct:  195 GTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHARKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGVILIAATNRPDVLDPALLRPGRFDRQVIVALPDVRGRKQILKVHMRKVPLSEDVDPMIIA 350          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.828e-28
Identity = 67/156 (42.95%), Postives = 93/156 (59.62%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S+ G E +  ++G     VRD+F KA   APCL+F DE D++  +RG    G  D   + +NQ LTE+DG E  +G+ V AAT+RPD+LD ALLRPGR DR +  D+P  + R  IL + ++   L ++V L AIA
Sbjct:  254 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVGYGGGNDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDLALLRPGRFDRQVTVDYPDVQGRELILAIHAQNKKLHEEVQLAAIA 409          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.828e-28
Identity = 67/156 (42.95%), Postives = 91/156 (58.33%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S    E +  ++G     VRD+F KA + APC++F DE D++  +RG    G  D   + +NQ LTE+DG    +GV V AAT+RPD+LD+ALLRPGR DR +  D P    R+ IL+V SR   L  DVD + +A
Sbjct:  305 GTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVA 460          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.387e-28
Identity = 73/158 (46.20%), Postives = 94/158 (59.49%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 466
            GCGKT +  A A   +  FI V G EL+ KYIG   + V ++F  A   AP ++F DE D+I  KR  + TG     +R + Q L E+DG +    V V AAT+RPD+LD ALLRPGR DRL+    P    RL+ILKV +R++ L   VDL AIA M
Sbjct:  184 GCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KGVDLRAIAEM 340          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.118e-28
Identity = 67/156 (42.95%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   +  FI V G EL+ KYIG   + VR+IF  A   AP ++F DE DSIA +R ++ TG      R + Q L E+DG +    + + AAT+RPD+LD A+LRPGR DRL+    P    R  ILK+   K+ LA+D+D + +A
Sbjct:  203 GTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLA 358          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.946e-28
Identity = 72/156 (46.15%), Postives = 94/156 (60.26%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GCGKT +  A A   +  FI V G EL+ K+IG   + V ++F  A   AP ++F DE D+I  KR  + TG     +R + Q L E+DG +    V V AAT+RPD+LD ALLRPGR DRL+    P  R RL+ILKV +RK+ L  +VDL  IA
Sbjct:  182 GCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNLR-NVDLSIIA 336          
The following BLAST results are available for this feature:
BLAST of CX289487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
FTSH6_ARATH8.205e-2944.23Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_MEDSA1.072e-2844.23Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_GUITH1.072e-2842.95Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH_ODOSI1.828e-2843.95Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH_BUCAP1.828e-2842.31Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH2_SYNY31.828e-2842.95Cell division protease ftsH homolog 2 OS=Synechocy... [more]
FTSH1_ARATH1.828e-2842.95Cell division protease ftsH homolog 1, chloroplast... [more]
PSMR_PYRHO2.387e-2846.20Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_METMA3.118e-2842.95Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_THEGJ6.946e-2846.15Proteasome-activating nucleotidase OS=Thermococcus... [more]

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Properties
Property NameValue
Genbank descriptionC02013G12SK IF1 Citrus clementina cDNA clone C02013G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289487 ID=CX289487; Name=CX289487; organism=Citrus clementina; type=EST; length=468bp
TGGTTGTGGCAAGACTCACATAGTTGGTGCTGCTGCTGCTGCTTGTTCAT
TACGATTTATATCAGTGAAAGGGCCTGAGCTGTTGAACAAATACATTGGT
GCTTCTGAGCAAGCTGTTCGGGATATATTCTCAAAAGCAACTGCTGCAGC
ACCATGCCTCCTCTTTTTTGATGAATTTGATTCTATTGCCCCAAAGCGAG
GGCATGATAATACTGGAGTGACTGATCGTGTTGTTAATCAGTTTCTGACT
GAGTTAGATGGCGTTGAAGTGTTGACTGGTGTATTTGTGTTTGCTGCAAC
AAGTAGACCGGATCTACTTGATGCTGCCCTGTTAAGACCTGGTAGGCTGG
ATCGCCTTCTCTTCTGTGATTTTCCATCTCCACGTGAGAGGTTGGATATT
CTTAAAGTTATTTCTAGAAAGTTACCATTGGCCGATGATGTTGATTTAGA
AGCCATAGCTCATATGAC
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