CX289487

Overview
NameCX289487
Unique NameCX289487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.946e-28
Identity = 65/156 (41.67%), Postives = 88/156 (56.41%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   ++ FI+V G E L  ++G     VRD+F+ A   APC+LF DE D++  KRG  N G     +  +NQ L E+DG    T V + A T+RPD+LD AL+RPGR DR +F   P  + R  I KV  R L L   ++ E +A
Sbjct:  352 GTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLA 507          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 9.072e-28
Identity = 65/156 (41.67%), Postives = 88/156 (56.41%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   ++ FI+V G E L  ++G     VRD+F+ A   APC+LF DE D++  KRG  N G     +  +NQ L E+DG    T V + A T+RPD+LD ALLRPGR DR +F   P  + R  I KV  R L L   ++ + +A
Sbjct:  351 GTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLA 506          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.185e-27
Identity = 69/156 (44.23%), Postives = 90/156 (57.69%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A      FI + G EL+ KYIG   + VR++F  A   +P ++F DE DSI  KR    T       R + Q L E+DG +    V + AAT+RPD+LD ALLRPGR DR++    P+   R  ILK+ +RK+ LADDVDL  IA
Sbjct:  203 GTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIA 358          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.185e-27
Identity = 71/158 (44.94%), Postives = 94/158 (59.49%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 466
            GCGKT +  A A   +  FI V G EL+ KYIG   + V ++F  A   AP ++F DE D+I  KR  + TG     +R + Q L E+DG +    V V AAT+RPD+LD ALLRPGR DRL+    P    RL+ILKV +R++ L  +VDL  IA +
Sbjct:  184 GCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KNVDLRVIAEI 340          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.185e-27
Identity = 67/156 (42.95%), Postives = 91/156 (58.33%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   +  FI V G EL+ KYIG   + VR+IF  A   AP ++F DE DSIA +R ++ TG      R + Q L E+DG +    + + AAT+RPD+LD A+LRPGR DRL+    P    R  ILK+   K+ LA D+D + +A
Sbjct:  203 GTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLA 358          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.185e-27
Identity = 65/156 (41.67%), Postives = 88/156 (56.41%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   ++ FI+V G E L  ++G     VRD+F+ A   APC+LF DE D++  KRG  N G     +  +NQ L E+DG    T V + A T+RPD+LD ALLRPGR DR +F   P  + R  I KV  R L L   ++ + +A
Sbjct:  350 GTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLA 505          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.547e-27
Identity = 63/156 (40.38%), Postives = 90/156 (57.69%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S+ G + +  ++G     VRD+F  A   APC++F DE D++  +RG    G  D   + +NQ L E+DG     G+ + AAT+R D+LD ALLRPGR DR +  + P    R ++LKV +R  PL DDV+L+ IA
Sbjct:  209 GTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPLNDDVNLKTIA 364          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: SPA5L_BOVIN (Spermatogenesis-associated protein 5-like protein 1 OS=Bos taurus GN=SPATA5L1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.021e-27
Identity = 71/186 (38.17%), Postives = 98/186 (52.69%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT--GVTDRVVNQFLTELDGVEVLT-------------------------------GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GC KT +V A A +C   F+SV G +L + ++G SE+ +  +F +A A  P ++F DE DSI   R    T   V DRV++  L ELDGV + T                                V V AAT+RPD+LD ALLRPGRLD++++   P  + RL ILKV ++  P+  DV LE +A
Sbjct:  510 GCAKTTLVRALATSCRCSFVSVSGADLFSPFVGDSEKILSQVFRQARANTPAIVFLDEIDSILGSRSISRTECNVQDRVLSVLLNELDGVGLKTIERRGSKSDQHGKCKQLEKNEELEFQEIFNSNVIVVAATNRPDVLDDALLRPGRLDKIIYIPPPDEKGRLSILKVCTKNTPMGPDVSLEKVA 695          

HSP 2 Score: 113.62 bits (283), Expect = 4.214e-25
Identity = 67/158 (42.41%), Postives = 89/158 (56.33%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAA---PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 466
            G GKT +V A A       ++V  P L     G +E+ VR IF +A   A   P LLF DE D++ P+RG  +     RVV Q LT LDG+     V V  +T+RPD LD AL RPGR DR +    P+ R+R  IL+VI+ K+P++  VDL  +A M
Sbjct:  244 GVGKTQLVRAVARETGAELLAVSAPALQGARPGETEENVRRIFKRARELASRRPTLLFLDEVDALCPRRGGPHQAPESRVVAQVLTLLDGIGEDREVVVVGSTNRPDALDPALRRPGRFDREVVIGTPTLRQRKAILQVITSKMPISGQVDLNLLAEM 401          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.021e-27
Identity = 71/158 (44.94%), Postives = 94/158 (59.49%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 466
            GCGKT +  A A   +  FI V G EL+ K+IG   + V ++F  A   AP ++F DE D+I  KR  + TG     +R + Q L E+DG +    V V AAT+RPD+LD ALLRPGR DRL+    P  + RL+ILKV +RK+ L   VDL  IA +
Sbjct:  182 GCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEI 338          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.021e-27
Identity = 64/156 (41.03%), Postives = 91/156 (58.33%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F ++ G + +  ++G     VRD+F  +  +APC++F DE D++  +RG    G  D   + +NQ L E+DG +   G+ + AAT+RPD+LD ALLRPGR DR +    P  R R  ILKV  RK+PL+ DVD   IA
Sbjct:  195 GTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQVIVALPDIRGREQILKVHMRKVPLSKDVDPMIIA 350          
The following BLAST results are available for this feature:
BLAST of CX289487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
AFG32_BOVIN6.946e-2841.67AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
AFG32_HUMAN9.072e-2841.67AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
PSMR_UNCMA1.185e-2744.23Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_PYRAB1.185e-2744.94Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_METAC1.185e-2742.95Proteasome-activating nucleotidase OS=Methanosarci... [more]
AFG32_MOUSE1.185e-2741.67AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
FTSH_BACPF1.547e-2740.38Cell division protease ftsH homolog OS=Bacillus ps... [more]
SPA5L_BOVIN2.021e-2738.17Spermatogenesis-associated protein 5-like protein ... [more]
PSMR_PYRKO2.021e-2744.94Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
FTSH_BUCAI2.021e-2741.03Cell division protease ftsH OS=Buchnera aphidicola... [more]

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Properties
Property NameValue
Genbank descriptionC02013G12SK IF1 Citrus clementina cDNA clone C02013G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289487 ID=CX289487; Name=CX289487; organism=Citrus clementina; type=EST; length=468bp
TGGTTGTGGCAAGACTCACATAGTTGGTGCTGCTGCTGCTGCTTGTTCAT
TACGATTTATATCAGTGAAAGGGCCTGAGCTGTTGAACAAATACATTGGT
GCTTCTGAGCAAGCTGTTCGGGATATATTCTCAAAAGCAACTGCTGCAGC
ACCATGCCTCCTCTTTTTTGATGAATTTGATTCTATTGCCCCAAAGCGAG
GGCATGATAATACTGGAGTGACTGATCGTGTTGTTAATCAGTTTCTGACT
GAGTTAGATGGCGTTGAAGTGTTGACTGGTGTATTTGTGTTTGCTGCAAC
AAGTAGACCGGATCTACTTGATGCTGCCCTGTTAAGACCTGGTAGGCTGG
ATCGCCTTCTCTTCTGTGATTTTCCATCTCCACGTGAGAGGTTGGATATT
CTTAAAGTTATTTCTAGAAAGTTACCATTGGCCGATGATGTTGATTTAGA
AGCCATAGCTCATATGAC
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