CX289492

Overview
NameCX289492
Unique NameCX289492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_RAT (Eukaryotic translation initiation factor 3 subunit H OS=Rattus norvegicus GN=Eif3h PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.057e-25
Identity = 59/153 (38.56%), Postives = 97/153 (63.40%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EE+P+ + NS LI+  M ELE  + V  + ++ L L+SS  L +N++ L++ +D++S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S  +FKP   P R++S LIA +I  YC  I   T Q+  +L++ +AL +
Sbjct:  199 EEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHLGKNLQLLMDRVDEMSQDIIKYNTYMRNSSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSK-LFKPHQAPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 349          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_MOUSE (Eukaryotic translation initiation factor 3 subunit H OS=Mus musculus GN=Eif3h PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.984e-25
Identity = 58/153 (37.91%), Postives = 97/153 (63.40%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EE+P+ + NS LI+  M ELE  + V  + ++ L L+SS  L ++++ L++ +D++S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S  +FKP   P R++S LIA +I  YC  I   T Q+  +L++ +AL +
Sbjct:  199 EEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHLGKSLQLLMDRVDEMSQDIIKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSK-LFKPHQAPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 349          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_BOVIN (Eukaryotic translation initiation factor 3 subunit H OS=Bos taurus GN=EIF3H PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.984e-25
Identity = 58/153 (37.91%), Postives = 96/153 (62.75%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EE+P+ + NS LI+  M ELE  + V  + ++ L L+SS  L + ++ L++ +D++S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S  +FKP   P R++S LIA +I  YC  I   T Q+  +L++ +AL +
Sbjct:  199 EEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHLGKTLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSK-LFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 349          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_BOMMO (Eukaryotic translation initiation factor 3 subunit H OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22
Identity = 59/152 (38.82%), Postives = 86/152 (56.58%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            E+P+ + NS L +  ++EL    P  +     L L ++  LE  +  L+E +D+L+ E  KF  Y + + RQQ  +  W+ KR  EN AR A  E PLPEED  N +FKP P PPRL   ++A +I  Y   I+    QS ++LYLT+AL +
Sbjct:  180 EVPIVIRNSPLTNIMISELTEMIP-EEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDV-NKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKLYLTQALQN 329          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_ANOGA (Eukaryotic translation initiation factor 3 subunit H OS=Anopheles gambiae GN=AGAP009204 PE=3 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.398e-20
Identity = 53/152 (34.87%), Postives = 89/152 (58.55%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EIP+ + NSAL +  M+EL    P  +  +  L L ++  LE ++  +++ +D+L+ E  KF  Y ++  RQ+ ++   L K   EN AR A GE+ +PEE+  N +F+PIP P RL   +++ +I  Y   I+    QS ++LY+T+AL +
Sbjct:  179 EIPIVIKNSALCNIMMSELTELVPEEEGTHF-LDLGTASVLENHLRCMMDRVDELNHEATKFNKYQQAAIRQEQEKHRMLAKHAQENAARIAKGEQAVPEEEV-NKLFRPIPVPTRLNPMIVSGQINTYAQHISQFCSQSLAKLYMTQALQN 328          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_NEOFI (Eukaryotic translation initiation factor 3 subunit H OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_015650 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20
Identity = 57/170 (33.53%), Postives = 91/170 (53.53%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELE-PDTP---------------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTK 447
            E+PV++ NS LI++F+ +L+ P+ P                     +   +YD L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+Q +  +W QKR+ EN A +AA ++PL  ED    +FK   EP RLES L + ++  Y  QI+     +  +++  K
Sbjct:  169 ELPVEIHNSHLITSFIHQLQTPNIPAPTDLPPSLAALESGPFVKSSILAPNYDNLTLSIDPFLEKNCDLLLDSIETHHTETNNFQYYQRSLAREQQRISAWQQKRKQEN-ATRAALKQPLLPEDEWQRLFKLPQEPSRLESMLNSRQVDQYARQIDSFVSSTTGKMFAVK 337          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPTN (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_00190 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELE-------PDTP---------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTK 447
            E+PV++ NS LI+ F+ +L+        D P               +   +YD L LS  PFLE+N + L++ ++  + E   FQ+Y RS TR+Q +   W+ KR+ EN +R    + PLP ED    +FK   EP RLES L + ++  Y  Q++     +  +++  K
Sbjct:  187 ELPVEIHNSHLITTFLHQLQCPRQSAPTDLPPSLAALESGPFVKDTILAPNYDNLSLSIDPFLEKNCDLLLDSIETHNTETNNFQYYQRSFTREQTKINQWIAKRKAENASRATLKQPPLP-EDEWQRLFKLPQEPSRLESMLNSRQVEQYARQVDSFVSATTGKMFAVK 355          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPNC (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An08g01790 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 55/170 (32.35%), Postives = 89/170 (52.35%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRD----------------------YDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTK 447
            E+PV++ NS LI++F+ +L+  T  T  D                      +D L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+QA+  +W  KR+ EN A +AA ++PL  ED    +FK   EP RL+S L + ++  Y  Q++     +  +++  K
Sbjct:  187 ELPVEIHNSHLITSFIHQLQTPTQATPSDLPPSLAALESSQYAKSSVLAPNFDNLSLSIDPFLEKNCDLLLDSIEVHHTETNNFQYYQRSLAREQAKITAWQNKRKTEN-ASRAALKQPLLPEDEWQRLFKLPQEPSRLDSMLNSRQVEQYARQVDSFVSATTGKMFAVK 355          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPFU (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus fumigatus GN=AFUA_1G09970 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.291e-19
Identity = 56/170 (32.94%), Postives = 91/170 (53.53%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELE-PDTP---------------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTK 447
            E+PV++ NS LI++F+ +L+ P+ P                     +   ++D L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+Q +  +W QKR+ EN A +AA ++PL  ED    +FK   EP RLES L + ++  Y  QI+     +  +++  K
Sbjct:  187 ELPVEIHNSHLITSFIHQLQTPNIPAPTELPSSLAALESGPFVKSSILAPNFDNLALSIDPFLEKNCDLLLDSIETHHTETNNFQYYQRSLAREQQRISAWQQKRKQEN-ATRAALKQPLLPEDEWQRLFKLPQEPSRLESMLNSRQVDQYARQIDSFVSSTTGKMFAVK 355          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPFC (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_009410 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.291e-19
Identity = 56/170 (32.94%), Postives = 91/170 (53.53%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELE-PDTP---------------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTK 447
            E+PV++ NS LI++F+ +L+ P+ P                     +   ++D L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+Q +  +W QKR+ EN A +AA ++PL  ED    +FK   EP RLES L + ++  Y  QI+     +  +++  K
Sbjct:  187 ELPVEIHNSHLITSFIHQLQTPNIPAPTELPSSLAALESGPFVKSSILAPNFDNLALSIDPFLEKNCDLLLDSIETHHTETNNFQYYQRSLAREQQRISAWQQKRKQEN-ATRAALKQPLLPEDEWQRLFKLPQEPSRLESMLNSRQVDQYARQIDSFVSSTTGKMFAVK 355          
The following BLAST results are available for this feature:
BLAST of CX289492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EIF3H_RAT2.057e-2538.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_MOUSE5.984e-2537.91Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOVIN5.984e-2537.91Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOMMO2.128e-2238.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ANOGA3.398e-2034.87Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_NEOFI4.438e-2033.53Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPTN9.886e-2031.76Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPNC9.886e-2032.35Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPFU1.291e-1932.94Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPFC1.291e-1932.94Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02013H06SK IF1 Citrus clementina cDNA clone C02013H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289492 ID=CX289492; Name=CX289492; organism=Citrus clementina; type=EST; length=537bp
GAGGAAATTCCTGTTAAAGTCTCAAATTCTGCACTTATTAGTGCCTTTAT
GACTGAGCTGGAACCTGATACTCCAGTCACACAGCGTGATTACGACCGCC
TGCAATTGTCAAGCAGTCCATTCTTGGAGAGGAATATGGAATTTTTGATT
GAATGCATGGATGATTTGTCAGTGGAACAACAAAAGTTCCAATTTTACTA
TCGAAGCCTAACACGTCAGCAAGCTCAGCAGCAATCATGGCTTCAGAAGA
GAAGGGATGAGAATAAGGCACGTAAAGCTGCTGGAGAGGAGCCTTTGCCT
GAGGAGGATCCTTCAAATCCCATCTTTAAGCCAATTCCTGAGCCTCCTCG
ATTGGAAAGTTTTCTAATTGCAAATCGGATTGCCAACTATTGCAACCAAA
TTAATGGGGTTACGGGACAGAGCTTTAGTCGATTATATTTGACGAAAGCT
TTGCATGATAATTGATGTGAAGCTCGATGGCAACTCTCTTATACCTATTT
TGCAGTAGCTGTTTGAAGATGAGATTGTGATTGCAAA
back to top