CX289492

Overview
NameCX289492
Unique NameCX289492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPCL (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus clavatus GN=ACLA_025520 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.291e-19
Identity = 56/170 (32.94%), Postives = 90/170 (52.94%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFM-----------TELEP-----------DTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTK 447
            E+PV++ NS LI++F+           TEL P           ++ +   +YD L LS  PFLE+N + L++ M+    E   FQ+Y RSL R+Q +  +W QKR+ EN A +A  ++PL  ED    +FK   EP RL+S L + ++  Y  Q++     +  +++  K
Sbjct:  187 ELPVEIHNSHLITSFIHQLQTPNIPTPTELPPSLAALESGPFVNSTILAPNYDNLTLSIDPFLEKNCDLLLDSMETHHTETNNFQYYQRSLAREQQRISAWQQKRKQEN-ATRATLKQPLLPEDEWQRLFKLPQEPSRLDSMLNSRQVDQYARQVDSFVSATTGKMFAVK 355          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_MONBE (Eukaryotic translation initiation factor 3 subunit H OS=Monosiga brevicollis GN=9558 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 54/152 (35.53%), Postives = 92/152 (60.53%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFK-PIPEPP-RLESFLIANRIANYCNQINGVTGQSFSRLYLTKA 450
            E++PV +  S++    + EL  +   ++  +DR+ L+++ F+ RN++ L+E +DDLS E  KFQ Y+R+ T+ +A   + L+ RR EN+  +A G   LPE+  +  +     P PP RL S L+  +I  +C Q++  +GQSF +LY+ KA
Sbjct:  200 EKVPVTIRASSMARLLIPELSANLDQSEI-FDRMDLNATSFMSRNIKLLMEGIDDLSQEAYKFQQYHRNATKAKASLDAQLEARRAENEQLRAKG---LPEKSEAELVANHKTPTPPSRLGSLLVTAQINTFCKQVSDFSGQSFGKLYIAKA 347          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_YARLI (Eukaryotic translation initiation factor 3 subunit H OS=Yarrowia lipolytica GN=YALI0F16005g PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 50/151 (33.11%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELE---PDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTK 447
            E+PV++ NS L +  + +L    P++P  +  +  L +S  PFLE+N+E + + +DD   +Q  + +Y R +TR+QA+   W QKR+ EN AR+  G   LP  D    +FK   EP R ++ LI+ ++  +C+ I        S+L+ T+
Sbjct:  194 ELPVEIKNSNLATLLLYQLGQQYPNSPFAESSFSNLNVSVDPFLEKNIEAIFDSVDDFHYDQGNYNYYQRQMTREQAKITQWQQKRKAENAAREKDGRPALP-TDEWKRLFKLPTEPSRQDNLLISAQLNEHCSVIEEFGAAVNSKLFATQ 343          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_AEDAE (Eukaryotic translation initiation factor 3 subunit H OS=Aedes aegypti GN=AAEL007945 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 50/150 (33.33%), Postives = 87/150 (58.00%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKAL 453
            EIP+ + NSAL +  M+E++   P  +  +  L L ++  LE ++  L++ +D+L+ E  KF  Y +++ RQ+  +   L K   EN AR A GE  +P+E+    +F+P+P P RL   +++ +I  Y   I+    QS ++LY+T+AL
Sbjct:  181 EIPIVIKNSALCNIMMSEMKEMVPEEEGTHF-LDLGTASVLENHLRCLMDRVDELNQEANKFNKYQQTVIRQEQDKHRMLAKHAQENAARIAKGEAAIPDEEVQK-LFRPLPVPSRLNPMIVSGQINTYAQHISQFCSQSLAKLYMTQAL 328          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_PHANO (Eukaryotic translation initiation factor 3 subunit H OS=Phaeosphaeria nodorum GN=SNOG_06952 PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 6.408e-19
Identity = 55/171 (32.16%), Postives = 90/171 (52.63%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTEL--------------------EPDTPVTQR--DYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKA 450
            E+PV V NS L+++ + +L                    +P+TP+     +YD L LS  PFLE+  + L+E +++   E   +Q+Y R L R+Q +  +W QKR+ EN AR  A ++PL  ED    +FK   EP RLE+ L + ++  Y  Q++G      S+++  K+
Sbjct:  189 ELPVTVHNSHLLTSLLHQLPSEAPKEELSFPPNLAALQQDPNTPLPPLFPNYDALDLSIDPFLEKTCDLLLESIENHHTELNNYQYYQRQLAREQTKITAWQQKRKAENAAR-TASKQPLLPEDEWQRLFKLPAEPSRLETLLNSRQVEQYSRQVDGFAAGVTSKMFAVKS 358          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPOR (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus oryzae GN=AO090038000435 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.093e-18
Identity = 55/170 (32.35%), Postives = 87/170 (51.18%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRD----------------------YDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTK 447
            E+PV++ NS LI+ F+ +L+  +  T  D                      +D L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+QA+  +W  KR+ EN A +AA ++PL  ED    +FK   EP RLE+ L   ++  Y  QI+     +  +++  K
Sbjct:  187 ELPVEIHNSHLITTFIHQLQCPSQSTPTDLPPSLAALEKSSFVKDSVLAPNFDNLSLSIDPFLEKNCDLLLDSIETHHTETNNFQYYQRSLAREQAKITAWQAKRKAEN-ASRAALKQPLLPEDEYQRLFKLPQEPSRLETMLNTRQVEQYSRQIDSFVSATTGKMFAVK 355          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_EMENI (Eukaryotic translation initiation factor 3 subunit H OS=Emericella nidulans GN=AN1270 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.864e-18
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRD----------------------YDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQIN 405
            E+PV++ NS LI++F+ +L+  T  T  +                      +D L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+QA+  +W  KR+ EN  R    + PLP ED    +FK   EP RL+S L + ++  Y  QI+
Sbjct:  188 ELPVEIHNSHLITSFIHQLQNQTQATPAEIPTSLATLESSPFAKQTILAPNFDNLSLSIDPFLEKNCDLLLDSIETHHTETSNFQYYQRSLAREQAKITAWQAKRKAENATRATLKQPPLP-EDEWQRLFKLPQEPSRLDSMLNSRQVEQYARQID 342          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_COCIM (Eukaryotic translation initiation factor 3 subunit H OS=Coccidioides immitis GN=CIMG_10297 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.435e-18
Identity = 53/170 (31.18%), Postives = 85/170 (50.00%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRD----------------------YDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTK 447
            E+PV++ NS L+++++ +L    P    D                      +D L LS  PFLE+N + L+E ++    E   FQ+Y RSL R+Q +  +W  KR+ EN A +A  ++PL  ED    +FK   EP RLES L   ++  Y  QI+G    +  +++  +
Sbjct:  169 ELPVQIHNSHLLTSYLHQLPSPPPAENLDLPPSLAALTNDPLASSSLLTPNFDNLALSIDPFLEKNCDMLLESIETHHTENNNFQYYQRSLAREQTKIAAWQAKRKAEN-ATRAQLKQPLLAEDEWQRLFKLPQEPSRLESMLNTRQVEQYSRQIDGFVSATTGKMFAVR 337          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_CULQU (Eukaryotic translation initiation factor 3 subunit H OS=Culex quinquefasciatus GN=CPIJ005299 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.425e-18
Identity = 49/150 (32.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKAL 453
            E+P+ + NSAL +  M+EL    P  +  +  L L ++  LE ++  +++ +D+L+ E  KF  Y +++ RQ+  +   L K   EN AR A GE  +P +D    +F+P   PPRL   +++ +I  Y   I+    QS ++LY+T+AL
Sbjct:  181 EVPIVIKNSALCNIMMSELAEMVPEEEGTHF-LDLGTASVLENHLRSMMDRVDELNQEANKFNKYQQTVIRQEQDKHRMLAKHAQENAARIAKGETAIP-DDEITKLFRPPTVPPRLNPLIVSGQINTYAKHISQFCSQSLAKLYMTQAL 328          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_CHAGB (Eukaryotic translation initiation factor 3 subunit H OS=Chaetomium globosum GN=CHGG_05046 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.253e-18
Identity = 54/168 (32.14%), Postives = 86/168 (51.19%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTEL-------EPDTPVTQRD-------------YDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTK 447
            E+PV V NS L+++F+ ++       E   P +  D             +D L LS  PFLE+  + L++ ++    +    Q+Y R LTR+Q +   W  KR+ EN AR AA ++PLP ED    +FK   EP RLE  L A ++  Y  Q++G T    ++++  +
Sbjct:  190 EVPVVVHNSHLLTSFLHQIPAPPKSAEIPLPASLEDIRRDPAQLPAHPSFDTLDLSIDPFLEKTCDLLLDSIESHYSDLNNHQYYQRQLTREQFKITQWQTKRKAENAARLAAKQQPLP-EDEWQRLFKLPQEPSRLEGMLNARQVEQYSKQVDGFTASITTKMFAVR 356          
The following BLAST results are available for this feature:
BLAST of CX289492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EIF3H_ASPCL1.291e-1932.94Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_MONBE2.202e-1935.53Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_YARLI2.876e-1933.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_AEDAE2.876e-1933.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_PHANO6.408e-1932.16Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPOR1.093e-1832.35Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_EMENI1.864e-1833.97Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_COCIM2.435e-1831.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CULQU5.425e-1832.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CHAGB9.253e-1832.14Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC02013H06SK IF1 Citrus clementina cDNA clone C02013H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289492 ID=CX289492; Name=CX289492; organism=Citrus clementina; type=EST; length=537bp
GAGGAAATTCCTGTTAAAGTCTCAAATTCTGCACTTATTAGTGCCTTTAT
GACTGAGCTGGAACCTGATACTCCAGTCACACAGCGTGATTACGACCGCC
TGCAATTGTCAAGCAGTCCATTCTTGGAGAGGAATATGGAATTTTTGATT
GAATGCATGGATGATTTGTCAGTGGAACAACAAAAGTTCCAATTTTACTA
TCGAAGCCTAACACGTCAGCAAGCTCAGCAGCAATCATGGCTTCAGAAGA
GAAGGGATGAGAATAAGGCACGTAAAGCTGCTGGAGAGGAGCCTTTGCCT
GAGGAGGATCCTTCAAATCCCATCTTTAAGCCAATTCCTGAGCCTCCTCG
ATTGGAAAGTTTTCTAATTGCAAATCGGATTGCCAACTATTGCAACCAAA
TTAATGGGGTTACGGGACAGAGCTTTAGTCGATTATATTTGACGAAAGCT
TTGCATGATAATTGATGTGAAGCTCGATGGCAACTCTCTTATACCTATTT
TGCAGTAGCTGTTTGAAGATGAGATTGTGATTGCAAA
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