CX289492

Overview
NameCX289492
Unique NameCX289492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_MAGGR (Eukaryotic translation initiation factor 3 subunit H OS=Magnaporthe grisea GN=MGG_05156 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.061e-17
Identity = 53/170 (31.18%), Postives = 88/170 (51.76%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVT-------------QRD---------YDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTK 447
            E+PV + NS L++ ++ ++ P  P               QR+          D L+LS  PFLE+  + L++ ++    +    Q+Y R +TR+QA+  +W  KR+ EN AR AA +EPLP +D    +FK   EP RLE  L A ++  Y  Q++G T    ++++  +
Sbjct:  190 EMPVVIHNSHLLTTYLHQI-PSAPAAGSETTIPTSLAALQREPVNIPPYPSIDSLELSIDPFLEKTCDLLLDSIEAHYTDLNNHQYYQRQMTREQAKITAWQAKRKAENAARAAAKQEPLP-DDEWKRLFKLPQEPSRLEGMLNARQVEQYSKQVDGFTANVSAKMFAVR 357          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_SCLS1 (Eukaryotic translation initiation factor 3 subunit H OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_01190 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.516e-17
Identity = 51/169 (30.18%), Postives = 84/169 (49.70%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDY--------------------DRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKA 450
            E+P+ V NS L+++F+ ++  + P  + D+                    + L LS  P+LER  + L++ ++    E   FQ++ R LTR+QA+  +W  KR  EN +R      PLP ED    +FK   EP RLE  L A ++  Y  Q++G T     +++  K+
Sbjct:  193 ELPIIVHNSHLLTSFLHQMPVELPKKELDFPASLADLTRNTPPTPLYPNLESLDLSIDPYLERTCDMLLDSIETHYTELNNFQYFQRQLTREQAKVTAWKTKRAAENASRATQKLAPLP-EDEWERLFKLPTEPSRLEGMLNARQVDQYSRQVDGFTASITGKMFAVKS 360          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_BOTFB (Eukaryotic translation initiation factor 3 subunit H OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_03240 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.998e-17
Identity = 51/169 (30.18%), Postives = 82/169 (48.52%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDY--------------------DRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKA 450
            E+P+ V NS L+++F+ ++  + P    D+                    + L LS  P+LER  + L++ ++    E   FQ++ R LTR+QA+  +W  KR  EN  R      PLP ED    +FK   EP RLE  L A ++  Y  Q++G T     +++  K+
Sbjct:  193 ELPIIVHNSHLLTSFLHQMPVELPKKDLDFPASFADLNRNTPPTPLYPNMESLDLSIDPYLERTCDMLLDSIETHYTELNNFQYFQRQLTREQAKVTAWKAKRTAENATRATQKLAPLP-EDEWERLFKLPTEPSRLEGMLNARQVEQYSRQVDGFTASITGKMFAVKS 360          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_NEUCR (Eukaryotic translation initiation factor 3 subunit H OS=Neurospora crassa GN=NCU07929 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.745e-16
Identity = 52/168 (30.95%), Postives = 84/168 (50.00%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTEL-------EPDTPVTQRD-------------YDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTK 447
            E+PV V NS L+++F+ ++       E   P +  D             ++ L LS  PFLE+  + L++ ++    +    Q+Y R LTR+Q +   W  KR+ EN AR AA + PLP ED    +FK   EP RLE  L A ++  Y  Q++  T    ++++  +
Sbjct:  187 ELPVNVHNSHLLTSFLHQIPAPPKSAEIPMPASLDDIRRDPVQIPAHPGFESLDLSIDPFLEKTCDLLLDSIESHYTDLNNHQYYQRQLTREQFKITQWQAKRKAENAARLAAKQSPLP-EDEWQRLFKLPQEPSRLEGMLNARQVDQYARQVDAFTANITAKMFAVR 353          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_DICDI (Eukaryotic translation initiation factor 3 subunit H OS=Dictyostelium discoideum GN=eif3h PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 46/151 (30.46%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKAL 453
            E+IP+K+ NS LI+A + E +  +      +DRL +S++ +LE+ +E + +C++ L+ E  K     R++   Q Q+ +++Q++  E +           +ED    + KP+  P +L S L+ N+I NY +QI+  +G S ++L L K L
Sbjct:  179 EQIPIKIHNSQLINALLYEFDGASNNLTNSFDRLNISNNIYLEKVVEGMTDCLESLNQELNKVYINQRNI---QTQKTNYIQQKFLEGQK---------VDEDELASMIKPLNPPSKLTSLLLTNQINNYTDQIHSFSGNSLTKLSLLKDL 317          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_DROGR (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila grimshawi GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.575e-15
Identity = 47/152 (30.92%), Postives = 82/152 (53.95%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EIP+ + NS L +  M+EL    P   + ++ L L ++  LE +M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PEE+     F+P+P P RL + + + +I  +   I     QS ++L++T+AL +
Sbjct:  180 EIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTASVLENHMRSLIERVDELYQESVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEEEVIKQ-FRPMPVPARLTATITSGQINTHAQHIAQFCSQSLAKLFITEALQN 329          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_DROVI (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila virilis GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.786e-14
Identity = 46/152 (30.26%), Postives = 82/152 (53.95%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EIP+ + NS L +  M+EL    P   + ++ L L ++  LE +M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PEE+     F+P+P P RL + + + +I  +   I     QS ++L++T++L +
Sbjct:  180 EIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTASVLENHMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEEEVIKQ-FRPMPVPARLTATITSGQINTHAQHIAQFCSQSLAKLFITESLQN 329          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_DROMO (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila mojavensis GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.786e-14
Identity = 46/152 (30.26%), Postives = 82/152 (53.95%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EIP+ + NS L +  M+EL    P   + ++ L L ++  LE +M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PEE+     F+P+P P RL + + + +I  +   I     QS ++L++T++L +
Sbjct:  180 EIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTASVLENHMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEEEVIKQ-FRPMPVPARLTATITSGQINTHAQHIAQFCSQSLAKLFITESLQN 329          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_DROAN (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila ananassae GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.786e-14
Identity = 46/152 (30.26%), Postives = 82/152 (53.95%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EIP+ + NS L +  M+EL    P   + ++ L L ++  LE +M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PEE+     F+P+P P RL + + + +I  +   I     QS ++L++T++L +
Sbjct:  180 EIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTASVLENHMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEEEVIKQ-FRPMPVPARLTATITSGQINTHAQHIAQFCSQSLAKLFITESLQN 329          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_DROWI (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila willistoni GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 45/152 (29.61%), Postives = 81/152 (53.29%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EIP+ + NS L +  M+EL    P   + ++ L L ++  LE +M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  + EE+     F+P+P P RL + + + +I  +   I     QS ++L++T++L +
Sbjct:  180 EIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTASVLENHMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVSEEEVIKQ-FRPMPVPARLTATITSGQINTHAQHIAQFCSQSLAKLFITESLQN 329          
The following BLAST results are available for this feature:
BLAST of CX289492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EIF3H_MAGGR2.061e-1731.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_SCLS13.516e-1730.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOTFB5.998e-1730.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_NEUCR1.745e-1630.95Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DICDI7.331e-1530.46Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROGR9.575e-1530.92Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROVI2.786e-1430.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROMO2.786e-1430.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROAN2.786e-1430.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROWI2.358e-1329.61Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC02013H06SK IF1 Citrus clementina cDNA clone C02013H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289492 ID=CX289492; Name=CX289492; organism=Citrus clementina; type=EST; length=537bp
GAGGAAATTCCTGTTAAAGTCTCAAATTCTGCACTTATTAGTGCCTTTAT
GACTGAGCTGGAACCTGATACTCCAGTCACACAGCGTGATTACGACCGCC
TGCAATTGTCAAGCAGTCCATTCTTGGAGAGGAATATGGAATTTTTGATT
GAATGCATGGATGATTTGTCAGTGGAACAACAAAAGTTCCAATTTTACTA
TCGAAGCCTAACACGTCAGCAAGCTCAGCAGCAATCATGGCTTCAGAAGA
GAAGGGATGAGAATAAGGCACGTAAAGCTGCTGGAGAGGAGCCTTTGCCT
GAGGAGGATCCTTCAAATCCCATCTTTAAGCCAATTCCTGAGCCTCCTCG
ATTGGAAAGTTTTCTAATTGCAAATCGGATTGCCAACTATTGCAACCAAA
TTAATGGGGTTACGGGACAGAGCTTTAGTCGATTATATTTGACGAAAGCT
TTGCATGATAATTGATGTGAAGCTCGATGGCAACTCTCTTATACCTATTT
TGCAGTAGCTGTTTGAAGATGAGATTGTGATTGCAAA
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