CX289492

Overview
NameCX289492
Unique NameCX289492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_DROER (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila erecta GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 45/152 (29.61%), Postives = 80/152 (52.63%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EIP+ + NS L +  M+EL    P   + ++ L L ++  LE  M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PEE+     F+P+  P RL + + + +I  +   I     QS ++L++T++L +
Sbjct:  181 EIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTATVLENQMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEEEVIKQ-FRPMTAPNRLTATITSGQINTHAQHIAQFCSQSLAKLFITESLQN 330          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_DROPS (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila pseudoobscura pseudoobscura GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.023e-13
Identity = 45/152 (29.61%), Postives = 81/152 (53.29%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EIP+ + NS L +  M+EL    P   + ++ L L ++  LE +M  LIE +D+L  E  ++  Y + + +Q + +   L K   EN  R + GE  + EE+     F+P+P P RL + + + +I  +   I     QS ++L++T++L +
Sbjct:  180 EIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTASVLENHMRSLIERVDELYQEAVRYNKYQQVVFKQDSDKNRALAKLAAENAVRTSKGEPTVAEEEVIKQ-FRPMPVPARLTATITSGQINTHSQHIAQFCSQSLAKLFITESLQN 329          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_DROME (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila melanogaster GN=eIF-3p40 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.023e-13
Identity = 45/150 (30.00%), Postives = 79/150 (52.67%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKAL 453
            EIP+ + NS L +  M+EL    P   + ++ L L ++  LE  M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PEE+     F+P+  P RL + + + +I  +   I     QS ++L++T++L
Sbjct:  181 EIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTATVLENQMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEEEVIKQ-FRPMTAPNRLTATITSGQINTHAQHIAQFCSQSLAKLFITESL 328          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_USTMA (Eukaryotic translation initiation factor 3 subunit H OS=Ustilago maydis GN=UM00199 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.862e-13
Identity = 47/146 (32.19%), Postives = 73/146 (50.00%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTEL--------------------EPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRI 381
            EIPV + N+AL+ AF++ +                     P +      Y  L L+  P L  ++E  +E MD+ + E     F  R L R++A+  ++L +++ EN AR+A G  PLP ED  N +FK   EP RLE+ L+  +I
Sbjct:  233 EIPVSLRNTALLDAFLSSISTPSAPGPSIVQPSTSDLLRNPPSAALAPSYTSLNLALEPVLASSLESTLEIMDEHAAEAGNVGFQARQLAREKAKADAYLARKKAENAAREAQGLAPLPIED-VNRLFKIPAEPSRLEATLLLGQI 377          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_DROSE (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila sechellia GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 44/150 (29.33%), Postives = 79/150 (52.67%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKAL 453
            EIP+ + NS L +  M+EL    P   + ++ L L ++  LE  M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PE++     F+P+  P RL + + + +I  +   I     QS ++L++T++L
Sbjct:  181 EIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTATVLENQMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEDEVIKQ-FRPMTAPNRLTATITSGQINTHAQHIAQFCSQSLAKLFITESL 328          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_DROYA (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila yakuba GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.608e-12
Identity = 44/152 (28.95%), Postives = 79/152 (51.97%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EIP+ + NS L +  M+EL    P   + ++ L L ++  LE  M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  + EE+     F+P+  P RL + + + +I  +   I     QS ++L++T++L +
Sbjct:  181 EIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTATVLENQMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVAEEEVIKQ-FRPMTAPNRLTATITSGQINTHAQHIAQFCSQSLAKLFITESLQN 330          
BLAST of CX289492 vs. ExPASy Swiss-Prot
Match: EIF3H_SCHPO (Eukaryotic translation initiation factor 3 subunit H OS=Schizosaccharomyces pombe GN=eif3h PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.448e-12
Identity = 46/144 (31.94%), Postives = 70/144 (48.61%), Query Frame = 1
Query:    4 EIPVKVSNSALISAFMTEL-EPDTPVTQ-----------------RDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRI 381
            E+P+ + NS L +  +  L EP TP +                    +   ++S      +N+E L+E  D+   EQ    F+ R L R+QA+ Q W+ KR+ EN  R A   +PLP +D    IFK   EP  L+S LI+++I
Sbjct:  189 ELPIVIHNSHLATCLLHSLSEPPTPASTLTAEAALEDCESNLPLTETFSNFEVSLGTRYRKNIELLLESTDEFHYEQGNLGFHQRQLAREQAKIQQWIAKRKAENANRAAENLQPLPLDDWKR-IFKLPAEPRLLDSLLISSQI 331          
The following BLAST results are available for this feature:
BLAST of CX289492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EIF3H_DROER3.080e-1329.61Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROPS4.023e-1329.61Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROME4.023e-1330.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_USTMA6.862e-1332.19Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROSE8.962e-1329.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROYA2.608e-1228.95Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_SCHPO4.448e-1231.94Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC02013H06SK IF1 Citrus clementina cDNA clone C02013H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289492 ID=CX289492; Name=CX289492; organism=Citrus clementina; type=EST; length=537bp
GAGGAAATTCCTGTTAAAGTCTCAAATTCTGCACTTATTAGTGCCTTTAT
GACTGAGCTGGAACCTGATACTCCAGTCACACAGCGTGATTACGACCGCC
TGCAATTGTCAAGCAGTCCATTCTTGGAGAGGAATATGGAATTTTTGATT
GAATGCATGGATGATTTGTCAGTGGAACAACAAAAGTTCCAATTTTACTA
TCGAAGCCTAACACGTCAGCAAGCTCAGCAGCAATCATGGCTTCAGAAGA
GAAGGGATGAGAATAAGGCACGTAAAGCTGCTGGAGAGGAGCCTTTGCCT
GAGGAGGATCCTTCAAATCCCATCTTTAAGCCAATTCCTGAGCCTCCTCG
ATTGGAAAGTTTTCTAATTGCAAATCGGATTGCCAACTATTGCAACCAAA
TTAATGGGGTTACGGGACAGAGCTTTAGTCGATTATATTTGACGAAAGCT
TTGCATGATAATTGATGTGAAGCTCGATGGCAACTCTCTTATACCTATTT
TGCAGTAGCTGTTTGAAGATGAGATTGTGATTGCAAA
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