CX289498

Overview
NameCX289498
Unique NameCX289498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL4_ORYSJ (COBRA-like protein 4 OS=Oryza sativa subsp. japonica GN=BC1L9 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.779e-50
Identity = 86/132 (65.15%), Postives = 103/132 (78.03%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYK--GNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPK 390
            IKWD+M WTPDGY AVVT+ N+QQ+RHIQ PGW LGWTW +KEVIWSM G Q  EQGDCS  K   N+PH CKK PTVVDLLPG P + QI NCCK G +S+++QDP  + +SFQ+ VG +G +N+TVRVPK
Sbjct:   39 IKWDVMQWTPDGYAAVVTLSNYQQFRHIQPPGWQLGWTWQQKEVIWSMYGAQAIEQGDCSMSKEGSNVPHSCKKHPTVVDLLPGAPIDLQIANCCKAGSLSAFSQDPANSAASFQIIVGHSGNSNETVRVPK 170          
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL5_ARATH (COBRA-like protein 5 OS=Arabidopsis thaliana GN=COBL5 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.067e-41
Identity = 76/129 (58.91%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVP 387
            +KWD+++WTPDGYVAVVT +N+Q+ R I  PGW + W   KKEVIW+M+G +TT QG CS +KGNIP  C + PTVVDLLPGTP+NQQI NCCK GV+   ++      S+FQLSVG+AG + KT R+P
Sbjct:   34 VKWDLLNWTPDGYVAVVTAYNYQKQRSI--PGWKMSWRGTKKEVIWNMLGAKTTGQGGCSMFKGNIPQSCVRKPTVVDLLPGTPFNQQIANCCKSGVLKPGSE------SAFQLSVGSAGNSVKTARMP 154          
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL6_ARATH (COBRA-like protein 6 OS=Arabidopsis thaliana GN=COBL6 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 7.407e-35
Identity = 60/121 (49.59%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKY--KGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAA 357
            IKWD++  +P  +   VT+ N Q+YRH++ PGW L W W  +EVIW M G +TTEQG+CS +   GN+PHCC + PT+VDLLPG   N Q+ NCC+GGV++S +QD    +S+F ++VG++
Sbjct:   47 IKWDLLLSSPGQHHVQVTLENMQEYRHVEKPGWKLSWHWLNQEVIWDMKGAETTEQGNCSAFASSGNLPHCCLERPTIVDLLPGASLNVQVANCCRGGVLTSMSQDHANHVSAFHMTVGSS 167          
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL7_ORYSJ (COBRA-like protein 7 OS=Oryza sativa subsp. japonica GN=BC1LP1 PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.383e-33
Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYKG-NIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVG 351
            I WD  S   + Y  +V++ N Q YRHI+ PGW L W WA  E+IW M G + TEQGDC + +G   PHCC+K P +VDL PGTPYN Q+ +CC+GGV+SS  Q+  T+ ++FQ+ VG
Sbjct:   34 INWDFQS-IENVYTVMVSVHNHQLYRHIEQPGWRLSWRWAGNEIIWGMTGAEATEQGDCHRIRGATRPHCCEKQPVIVDLPPGTPYNNQVSSCCRGGVLSSLTQNNRTSTAAFQMVVG 150          
The following BLAST results are available for this feature:
BLAST of CX289498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COBL4_ORYSJ4.779e-5065.15COBRA-like protein 4 OS=Oryza sativa subsp. japoni... [more]
COBL5_ARATH1.067e-4158.91COBRA-like protein 5 OS=Arabidopsis thaliana GN=CO... [more]
COBL6_ARATH7.407e-3549.59COBRA-like protein 6 OS=Arabidopsis thaliana GN=CO... [more]
COBL7_ORYSJ2.383e-3350.85COBRA-like protein 7 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC02014A03SK IF1 Citrus clementina cDNA clone C02014A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289498 ID=CX289498; Name=CX289498; organism=Citrus clementina; type=EST; length=390bp
ATAAAATGGGATATAATGTCCTGGACTCCAGATGGCTATGTTGCTGTTGT
TACGATTTTCAACTTCCAACAATATCGCCATATTCAAGCACCAGGTTGGA
CATTGGGGTGGACATGGGCAAAAAAGGAAGTCATCTGGAGCATGATGGGA
GGACAAACCACAGAACAAGGAGATTGTTCAAAATATAAAGGGAACATCCC
ACATTGCTGCAAGAAGGATCCAACAGTTGTAGATTTGTTGCCGGGGACTC
CATATAACCAGCAGATTGAAAATTGTTGCAAAGGGGGAGTAATAAGCTCC
TGGGCACAGGACCCAACTACTGCATTAAGCTCATTCCAGCTCAGTGTTGG
TGCTGCAGGAACAACTAACAAAACTGTCAGAGTACCCAAA
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