CX289574

Overview
NameCX289574
Unique NameCX289574
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289574 vs. ExPASy Swiss-Prot
Match: EFG_HELP2 (Elongation factor G OS=Helicobacter pylori (strain P12) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  173 AKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD 436
            A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P+VE FG+S+ LR+AT G+      FDH+  + S+
Sbjct:  596 ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSN 681          
BLAST of CX289574 vs. ExPASy Swiss-Prot
Match: EFG_HELAH (Elongation factor G OS=Helicobacter acinonychis (strain Sheeba) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  173 AKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD 436
            A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P+VE FG+S+ LR+AT G+      FDH+  + S+
Sbjct:  596 ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSN 681          
BLAST of CX289574 vs. ExPASy Swiss-Prot
Match: EFG_STRTD (Elongation factor G OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=fusA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  170 TAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 421
            TA+P +LEP+ LV I  PE+ LG +   +  +RG V + M+  G     ++AY+P+ E FG+++TLR+AT G+     VFDH++
Sbjct:  594 TAQPTILEPMMLVTITVPEENLGDVMGHVTARRGRV-DGMEAHGNTQI-VRAYVPLAEMFGYATTLRSATQGRGTFMMVFDHYE 675          
BLAST of CX289574 vs. ExPASy Swiss-Prot
Match: EFG_STRT2 (Elongation factor G OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=fusA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  170 TAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 421
            TA+P +LEP+ LV I  PE+ LG +   +  +RG V + M+  G     ++AY+P+ E FG+++TLR+AT G+     VFDH++
Sbjct:  594 TAQPTILEPMMLVTITVPEENLGDVMGHVTARRGRV-DGMEAHGNTQI-VRAYVPLAEMFGYATTLRSATQGRGTFMMVFDHYE 675          
BLAST of CX289574 vs. ExPASy Swiss-Prot
Match: EFG_STRT1 (Elongation factor G OS=Streptococcus thermophilus (strain CNRZ 1066) GN=fusA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  170 TAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 421
            TA+P +LEP+ LV I  PE+ LG +   +  +RG V + M+  G     ++AY+P+ E FG+++TLR+AT G+     VFDH++
Sbjct:  594 TAQPTILEPMMLVTITVPEENLGDVMGHVTARRGRV-DGMEAHGNTQI-VRAYVPLAEMFGYATTLRSATQGRGTFMMVFDHYE 675          
The following BLAST results are available for this feature:
BLAST of CX289574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
EFG_HELP25.068e-1138.64Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELAH5.068e-1138.64Elongation factor G OS=Helicobacter acinonychis (s... [more]
EFG_STRTD6.619e-1140.48Elongation factor G OS=Streptococcus thermophilus ... [more]
EFG_STRT26.619e-1140.48Elongation factor G OS=Streptococcus thermophilus ... [more]
EFG_STRT16.619e-1140.48Elongation factor G OS=Streptococcus thermophilus ... [more]

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Properties
Property NameValue
Genbank descriptionC02014G11SK IF1 Citrus clementina cDNA clone C02014G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289574 ID=CX289574; Name=CX289574; organism=Citrus clementina; type=EST; length=487bp
GCACGAGGCTGGGTTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAAG
AAAACATGAGGGGCATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCC
GATGCTATCCACAGAGGTGGTGGCCAGGTTATTCCAACTGCTAGAAGGGT
CATTTATGCATCCCAGCTTACAGCCAAACCAAGGCTTCTTGAGCCTGTCT
ACTTGGTGGAAATCCAAGCTCCTGAACAGGCACTTGGTGGTATTTACAGT
GTTCTTAACCAGAAACGTGGTCACGTTTTTGAGGAGATGCAGAGACCTGG
TACCCCACTTTATAACATCAAGGCATACCTCCCGGTCGTTGAGTCTTTTG
GATTTTCCAGCACTTTGAGAGCTGCAACCTCTGGACAGGCATTCCCTCAA
TGTGTGTTTGATCACTGGGACATGATGTCATCTGATCCATTGGAGCCGGG
ATCCCAGGCTTCACAACTTGTTTTGGATATTAGGAAG
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