CX289577

Overview
NameCX289577
Unique NameCX289577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length329
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_CYACA (ATP synthase subunit beta, chloroplastic OS=Cyanidium caldarium GN=atpB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.451e-38
Identity = 76/107 (71.03%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG   ++TG PI++PVG+ TLGRI NV+GEPIDEKG + +   LPIHR AP F +  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   84 RGASAIDTGEPISIPVGKETLGRIFNVLGEPIDEKGPVISNDKLPIHRPAPKFTQLETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNVAKAH 190          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_CHLVU (ATP synthase subunit beta, chloroplastic OS=Chlorella vulgaris GN=atpB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.451e-38
Identity = 75/107 (70.09%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  VL++G P+ VPVG  TLGRI NV+GEP+D  G + T+  LPIHR APAFV+  T+  I  +GIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   77 RGMEVLDSGKPLNVPVGAATLGRIFNVLGEPVDNLGPVNTKDQLPIHRSAPAFVDLDTKLSIFESGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 183          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_CHLAT (ATP synthase subunit beta, chloroplastic OS=Chlorokybus atmophyticus GN=atpB PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 9.451e-38
Identity = 75/107 (70.09%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  VL+TG+P++VPVG  TLGRI NV+GEP+D  G +  +  LPIHR+ PAF E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   79 RGMEVLDTGAPLSVPVGEATLGRIFNVLGEPVDNLGPVANKSTLPIHRDPPAFTELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 185          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_ZYMMO (ATP synthase subunit beta OS=Zymomonas mobilis GN=atpD PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.234e-37
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ V++TGS I VPVG  TLGRIMNV+G P+DE+G + ++  +PIH +AP F EQ+T+  IL TGIKV+DLLAPY +GGK+GLFGGAGVGKTVLI ELINN+AK H
Sbjct:   71 RGQEVVDTGSEIRVPVGPETLGRIMNVVGRPVDERGPIGSKQTMPIHADAPPFTEQSTDTAILTTGIKVIDLLAPYSKGGKVGLFGGAGVGKTVLIQELINNIAKGH 177          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_STIHE (ATP synthase subunit beta, chloroplastic OS=Stigeoclonium helveticum GN=atpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.234e-37
Identity = 75/107 (70.09%), Postives = 86/107 (80.37%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG    +TG+P+ VPVG+ TLGRI NV+GEP+D  G ++TE  LPIHR APAF +  T   I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   78 RGMDATDTGTPLMVPVGKTTLGRIFNVLGEPVDNLGPVETEQKLPIHRSAPAFTDLDTRLAIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 184          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_PORPU (ATP synthase subunit beta, chloroplastic OS=Porphyra purpurea GN=atpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.234e-37
Identity = 76/107 (71.03%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TG+PI+VPVG  TLGRI NV+GEP+D  G + +E  LPIHR APAF +  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   70 RGVEVVDTGAPISVPVGTNTLGRIFNVLGEPVDNLGPVSSESTLPIHRPAPAFTKLETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 176          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_POPTR (ATP synthase subunit beta, chloroplastic OS=Populus trichocarpa GN=atpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.234e-37
Identity = 74/107 (69.16%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TG+P++VPVG  TLGRI NV+GEP+D+ G + T+   PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   87 RGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDDLGPVDTQITSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSA (ATP synthase subunit beta OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpD PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.234e-37
Identity = 76/107 (71.03%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TG+ I +PVG  TLGRI+NVIGEPIDE+G +  +  LPIH +AP FV+Q+TE +ILVTGIKV+DLLAPY +GGKIGL GGAGVGKTVLIMELINN+AKAH
Sbjct:   67 RGTEVVDTGAAIQMPVGPETLGRIINVIGEPIDERGPIGNKTTLPIHADAPEFVDQSTETEILVTGIKVIDLLAPYCKGGKIGLCGGAGVGKTVLIMELINNIAKAH 173          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_EMIHU (ATP synthase subunit beta, chloroplastic OS=Emiliania huxleyi GN=atpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.234e-37
Identity = 76/107 (71.03%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V+NTG+PITVPVG  TLGRI NV+GEP+DE G  +    LPIHR APAF +  T+  +  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+A+AH
Sbjct:   70 RGAAVVNTGAPITVPVGVPTLGRIFNVLGEPVDEMGPCEATAGLPIHRAAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELINNIARAH 176          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_DESVM (ATP synthase subunit beta OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=atpD PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.234e-37
Identity = 70/107 (65.42%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG   ++TG PI VPVG+ +LGRIMNV+G P+DE G +KT+ YLPIHR AP F EQ T+ ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV++ME+INN+AK H
Sbjct:   71 RGMEAVDTGKPIMVPVGKASLGRIMNVVGRPVDEMGPIKTDKYLPIHRPAPEFTEQNTKVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMINNIAKQH 177          
The following BLAST results are available for this feature:
BLAST of CX289577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CYACA9.451e-3871.03ATP synthase subunit beta, chloroplastic OS=Cyanid... [more]
ATPB_CHLVU9.451e-3870.09ATP synthase subunit beta, chloroplastic OS=Chlore... [more]
ATPB_CHLAT9.451e-3870.09ATP synthase subunit beta, chloroplastic OS=Chloro... [more]
ATPB_ZYMMO1.234e-3767.29ATP synthase subunit beta OS=Zymomonas mobilis GN=... [more]
ATPB_STIHE1.234e-3770.09ATP synthase subunit beta, chloroplastic OS=Stigeo... [more]
ATPB_PORPU1.234e-3771.03ATP synthase subunit beta, chloroplastic OS=Porphy... [more]
ATPB_POPTR1.234e-3769.16ATP synthase subunit beta, chloroplastic OS=Populu... [more]
ATPB_MAGSA1.234e-3771.03ATP synthase subunit beta OS=Magnetospirillum magn... [more]
ATPB_EMIHU1.234e-3771.03ATP synthase subunit beta, chloroplastic OS=Emilia... [more]
ATPB_DESVM1.234e-3765.42ATP synthase subunit beta OS=Desulfovibrio vulgari... [more]

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Properties
Property NameValue
Genbank descriptionC02014H02SK IF1 Citrus clementina cDNA clone C02014H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289577 ID=CX289577; Name=CX289577; organism=Citrus clementina; type=EST; length=329bp
TCGGCACGAGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACC
TGTGGGGAGAGTTACCCTGGGTCGTATTATGAATGTCATTGGAGAGCCTA
TTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCATCCACAGA
GAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCAC
TGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAGA
TCGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAA
CTTATTAACAATGTTGCGAAGGCTCATGG
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