CX289577

Overview
NameCX289577
Unique NameCX289577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length329
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_RHISN (ATP synthase subunit beta OS=Rhizobium sp. (strain NGR234) GN=atpD PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.409e-41
Identity = 83/107 (77.57%), Postives = 94/107 (87.85%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ V +TG PI+VPVG+ TLGRIMNVIGEP+DE G ++T     IH++APA+VEQ+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   98 RGQSVTDTGGPISVPVGKETLGRIMNVIGEPVDEAGPVETSSRRAIHQDAPAYVEQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 204          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_CHICK (ATP synthase subunit beta, mitochondrial OS=Gallus gallus GN=ATP5B PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.409e-41
Identity = 82/107 (76.64%), Postives = 94/107 (87.85%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G + T+ +  IH EAP FVE + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  126 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPITTKQFAAIHAEAPEFVEMSVEQKILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 232          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_DROVI (ATP synthase subunit beta, mitochondrial (Fragment) OS=Drosophila virilis GN=ATPsyn-beta PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.840e-41
Identity = 83/107 (77.57%), Postives = 93/107 (86.92%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ+VL+TGSPI +PVG  TLGRIMNVIGEPIDE+G + +    PIH EAP FV+ + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   98 RGQKVLDTGSPIRIPVGAETLGRIMNVIGEPIDERGPIPSAKTSPIHAEAPEFVDMSVEQEILVTGIKVVDLLAPYCKGGKIGLFGGAGVGKTVLIMELINNVAKAH 204          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_PELUB (ATP synthase subunit beta OS=Pelagibacter ubique GN=atpD PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.354e-41
Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V  TG+PI VPVG  TLGRI+NVIGEPIDEKG++KT+   PIHR AP F +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   64 RGDEVTATGAPIQVPVGPETLGRIINVIGEPIDEKGEVKTKEKWPIHRAAPEFSDQSTETEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 170          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_HYPNA (ATP synthase subunit beta OS=Hyphomonas neptunium (strain ATCC 15444) GN=atpD PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.993e-41
Identity = 78/105 (74.29%), Postives = 92/105 (87.62%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 321
            RGQ V + G+PITVPVG  TLGRIMNVIGEPIDE+G +  + Y+PIH +APAFV+QATE ++LVTGIKV+DLL PY +GGKIGLFGGAGVGKTVLIMEL+NN+AK
Sbjct:   69 RGQPVSDIGTPITVPVGPATLGRIMNVIGEPIDERGPVNADTYMPIHAQAPAFVDQATESEVLVTGIKVIDLLCPYAKGGKIGLFGGAGVGKTVLIMELVNNIAK 173          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_RHORU (ATP synthase subunit beta OS=Rhodospirillum rubrum GN=atpD PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 1.193e-40
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ+V +TG PITVPVG   LGRIMNVIGEP+DE+G + T    PIHR+AP F EQATE +ILVTGIKV+DL+APY +GGK+GLFGGAGVGKTVLI ELINNVAK H
Sbjct:   67 RGQQVTSTGGPITVPVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVLIQELINNVAKGH 173          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_RHORT (ATP synthase subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpD PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.193e-40
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ+V +TG PITVPVG   LGRIMNVIGEP+DE+G + T    PIHR+AP F EQATE +ILVTGIKV+DL+APY +GGK+GLFGGAGVGKTVLI ELINNVAK H
Sbjct:   67 RGQQVTSTGGPITVPVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVLIQELINNVAKGH 173          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_CAEEL (ATP synthase subunit beta, mitochondrial OS=Caenorhabditis elegans GN=atp-2 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.193e-40
Identity = 81/107 (75.70%), Postives = 92/107 (85.98%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ V +TG PI +PVG  TLGRIMNVIGEPIDE+G + ++++  IH EAP FVE + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  130 RGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 236          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPA (ATP synthase subunit beta OS=Rhodopseudomonas palustris GN=atpD PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.558e-40
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ V +TG+PI+VPVG  TLGRIMNVIGEP+DE+G +K+E    IH+EAPA+ +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVA+AH
Sbjct:   69 RGQEVTDTGAPISVPVGAGTLGRIMNVIGEPVDEQGPIKSEGLRAIHQEAPAYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVARAH 175          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_DROME (ATP synthase subunit beta, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-beta PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 1.558e-40
Identity = 81/107 (75.70%), Postives = 92/107 (85.98%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ+VL+TG PI +PVG  TLGRI+NVIGEPIDE+G + T+    IH EAP FV+ + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   98 RGQKVLDTGYPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEFVQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 204          
The following BLAST results are available for this feature:
BLAST of CX289577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RHISN1.409e-4177.57ATP synthase subunit beta OS=Rhizobium sp. (strain... [more]
ATPB_CHICK1.409e-4176.64ATP synthase subunit beta, mitochondrial OS=Gallus... [more]
ATPB_DROVI1.840e-4177.57ATP synthase subunit beta, mitochondrial (Fragment... [more]
ATPB_PELUB5.354e-4177.57ATP synthase subunit beta OS=Pelagibacter ubique G... [more]
ATPB_HYPNA6.993e-4174.29ATP synthase subunit beta OS=Hyphomonas neptunium ... [more]
ATPB_RHORU1.193e-4073.83ATP synthase subunit beta OS=Rhodospirillum rubrum... [more]
ATPB_RHORT1.193e-4073.83ATP synthase subunit beta OS=Rhodospirillum rubrum... [more]
ATPB_CAEEL1.193e-4075.70ATP synthase subunit beta, mitochondrial OS=Caenor... [more]
ATPB_RHOPA1.558e-4074.77ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_DROME1.558e-4075.70ATP synthase subunit beta, mitochondrial OS=Drosop... [more]

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Properties
Property NameValue
Genbank descriptionC02014H02SK IF1 Citrus clementina cDNA clone C02014H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289577 ID=CX289577; Name=CX289577; organism=Citrus clementina; type=EST; length=329bp
TCGGCACGAGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACC
TGTGGGGAGAGTTACCCTGGGTCGTATTATGAATGTCATTGGAGAGCCTA
TTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCATCCACAGA
GAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCAC
TGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAGA
TCGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAA
CTTATTAACAATGTTGCGAAGGCTCATGG
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