CX289577

Overview
NameCX289577
Unique NameCX289577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length329
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_CYAME (ATP synthase subunit beta, chloroplastic OS=Cyanidioschyzon merolae GN=atpB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.390e-35
Identity = 70/107 (65.42%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG +  +TG+PI+VPVG+VTLGRI NV+G+ +D  G +  +   PIH++AP+FV+  T+  +  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   64 RGIQAEDTGAPISVPVGKVTLGRIFNVLGDCVDNLGTVTRQAVQPIHKQAPSFVQLETKPSVFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 170          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_CLOBH (ATP synthase subunit beta OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=atpD PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.390e-35
Identity = 69/107 (64.49%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG   L+TG  ++VPVG+  LGR+ NV+G+PID  G+  +E   PIHR AP+F EQ+ E +I  TGIKV+DLLAPYQ+GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:   66 RGMEALDTGKSVSVPVGKEVLGRLFNVLGKPIDGAGEFISEESYPIHRPAPSFEEQSVEPEIFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVLIQELINNIAKEH 172          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_CLOB6 (ATP synthase subunit beta OS=Clostridium botulinum (strain 657 / Type Ba4) GN=atpD PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.390e-35
Identity = 69/107 (64.49%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG   L+TG  ++VPVG+  LGR+ NV+G+PID  G+  +E   PIHR AP+F EQ+ E +I  TGIKV+DLLAPYQ+GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:   66 RGMEALDTGKSVSVPVGKEVLGRLFNVLGKPIDGAGEFISEESYPIHRPAPSFEEQSVEPEIFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVLIQELINNIAKEH 172          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_CLOB1 (ATP synthase subunit beta OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=atpD PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.390e-35
Identity = 69/107 (64.49%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG   L+TG  ++VPVG+  LGR+ NV+G+PID  G+  +E   PIHR AP+F EQ+ E +I  TGIKV+DLLAPYQ+GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:   66 RGMEALDTGKSVSVPVGKEVLGRLFNVLGKPIDGAGEFISEESYPIHRPAPSFEEQSVEPEIFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVLIQELINNIAKEH 172          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_SHEHH (ATP synthase subunit beta OS=Shewanella halifaxensis (strain HAW-EB4) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.734e-35
Identity = 67/107 (62.62%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V+N+GSPI+VPVG  TLGRIMNV+G+PIDE G++  +    IHREAP++ +Q++  ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELINN+AKAH
Sbjct:   63 RGLEVVNSGSPISVPVGSATLGRIMNVLGDPIDECGEIGEQERYVIHREAPSYEDQSSSTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_PROM3 (ATP synthase subunit beta OS=Prochlorococcus marinus (strain MIT 9303) GN=atpD PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 5.734e-35
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG   L+TGS I+VPVG  TLGRI NV+GEP+DE+G + T+   PIHR AP   E  T+  +  TGIKV+DLLAPY++GGK+GLFGGAGVGKTVLI ELINN+AK H
Sbjct:   79 RGMEALDTGSAISVPVGEATLGRIFNVLGEPVDEQGPVTTDATAPIHRPAPKLTELETKPTVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINNIAKEH 185          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_MARMM (ATP synthase subunit beta OS=Maricaulis maris (strain MCS10) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.734e-35
Identity = 74/105 (70.48%), Postives = 83/105 (79.05%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 321
            RG  V +TG PI VPVG  TLGRIM+V G+PIDE GD+      PIHR AP+F EQATE ++L TGIKVVDLL PY +GGKIGLFGGAGVGKTVLI ELINN+AK
Sbjct:   66 RGTVVTDTGGPIMVPVGPGTLGRIMSVTGQPIDEAGDVPHTMKAPIHRPAPSFDEQATEAEVLPTGIKVVDLLCPYAKGGKIGLFGGAGVGKTVLIQELINNIAK 170          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_GLOVI (ATP synthase subunit beta OS=Gloeobacter violaceus GN=atpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.734e-35
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG + ++TG+PITVPVG+ TLGRI NV+GEPIDE G ++      IHR AP F +  T+ +I  TGIKV+DLLAPY++GGKIGLFGGAGVGKTVLI ELI+N+AK H
Sbjct:   76 RGMKAIDTGAPITVPVGKSTLGRIFNVLGEPIDELGPVEIVDKFSIHRSAPKFTDLVTQPEIFETGIKVIDLLAPYRKGGKIGLFGGAGVGKTVLIQELIHNIAKEH 182          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_DESVV (ATP synthase subunit beta OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.734e-35
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG    +TG PI VPVG+ +LGRIMNV+G P+DE G +  +  LPIHR AP F EQ T+ ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV++ME+INN+AK H
Sbjct:   71 RGMEASDTGKPIMVPVGKASLGRIMNVVGRPVDELGPINADKSLPIHRAAPEFTEQNTKVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMINNIAKQH 177          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_DESVH (ATP synthase subunit beta OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.734e-35
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG    +TG PI VPVG+ +LGRIMNV+G P+DE G +  +  LPIHR AP F EQ T+ ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV++ME+INN+AK H
Sbjct:   71 RGMEASDTGKPIMVPVGKASLGRIMNVVGRPVDELGPINADKSLPIHRAAPEFTEQNTKVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMINNIAKQH 177          
The following BLAST results are available for this feature:
BLAST of CX289577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CYAME4.390e-3565.42ATP synthase subunit beta, chloroplastic OS=Cyanid... [more]
ATPB_CLOBH4.390e-3564.49ATP synthase subunit beta OS=Clostridium botulinum... [more]
ATPB_CLOB64.390e-3564.49ATP synthase subunit beta OS=Clostridium botulinum... [more]
ATPB_CLOB14.390e-3564.49ATP synthase subunit beta OS=Clostridium botulinum... [more]
ATPB_SHEHH5.734e-3562.62ATP synthase subunit beta OS=Shewanella halifaxens... [more]
ATPB_PROM35.734e-3564.49ATP synthase subunit beta OS=Prochlorococcus marin... [more]
ATPB_MARMM5.734e-3570.48ATP synthase subunit beta OS=Maricaulis maris (str... [more]
ATPB_GLOVI5.734e-3564.49ATP synthase subunit beta OS=Gloeobacter violaceus... [more]
ATPB_DESVV5.734e-3562.62ATP synthase subunit beta OS=Desulfovibrio vulgari... [more]
ATPB_DESVH5.734e-3562.62ATP synthase subunit beta OS=Desulfovibrio vulgari... [more]

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Properties
Property NameValue
Genbank descriptionC02014H02SK IF1 Citrus clementina cDNA clone C02014H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289577 ID=CX289577; Name=CX289577; organism=Citrus clementina; type=EST; length=329bp
TCGGCACGAGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACC
TGTGGGGAGAGTTACCCTGGGTCGTATTATGAATGTCATTGGAGAGCCTA
TTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCATCCACAGA
GAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCAC
TGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAGA
TCGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAA
CTTATTAACAATGTTGCGAAGGCTCATGG
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