CX289577

Overview
NameCX289577
Unique NameCX289577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length329
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BACV8 (ATP synthase subunit beta OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=atpD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.412e-33
Identity = 69/107 (64.49%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V+ TG PIT+PVG    GR+MNV+GE +D    L  E   PIHRE P F E +T Q++L TGIKV+DLL PY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   74 RGMEVIPTGHPITMPVGNQIKGRLMNVVGEAVDGMRPLSKEGAFPIHREPPKFDELSTVQEVLFTGIKVIDLLEPYSKGGKIGLFGGAGVGKTVLIMELINNIAKKH 180          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_ANEMR (ATP synthase subunit beta, plastid OS=Aneura mirabilis GN=atpB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.412e-33
Identity = 70/107 (65.42%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            R   VL+TG+P +VPVG  TLGRI NV+GE +D  G +      PIHR AP+F++  T+  I  TGIKVVDLL PY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   85 REMEVLDTGAPSSVPVGEATLGRIFNVLGEAVDNLGPVDAGLTSPIHRAAPSFIQLDTKLSIFETGIKVVDLLVPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 191          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_ACTSZ (ATP synthase subunit beta OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=atpD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.412e-33
Identity = 66/107 (61.68%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V NTG+PI+VPVG  TLGRIMNV+GEPID+KG++  E    IHREAP++ +Q+   ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:   63 RGLAVKNTGNPISVPVGTKTLGRIMNVLGEPIDQKGEIGAEETWAIHREAPSYEDQSNSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 169          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_VIBAL (ATP synthase subunit beta OS=Vibrio alginolyticus GN=atpD PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 1.845e-33
Identity = 66/107 (61.68%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V+NTG+PI+VPVG  TLGRIMNV+G+ IDE+G++  E    IHR AP++ EQ+ E  +L TG+KV+DL+ P+ +GGKIGLFGGAGVGKTV +MELINN+A  H
Sbjct:   65 RGVEVVNTGAPISVPVGTKTLGRIMNVLGDAIDERGEVGAEEVYSIHRSAPSYEEQSNEIALLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMMELINNIALQH 171          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_ALISL (ATP synthase subunit beta OS=Aliivibrio salmonicida (strain LFI1238) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.845e-33
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V NTG+PITVPVG  TLGRIMNV+G+ IDE G++  E +  IHR AP++ EQA   ++L TG+KV+DL+ P+ +GGKIGLFGGAGVGKTV +MELINN+A  H
Sbjct:   65 RGLTVENTGAPITVPVGTKTLGRIMNVLGDAIDECGEIGAEEHYSIHRAAPSYEEQANSTELLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMMELINNIALQH 171          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_ALHEH (ATP synthase subunit beta OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.845e-33
Identity = 67/107 (62.62%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            R ++V  TG PI+VPVG+ TLGRIM+V+GEP+DEKG ++TE    IHR AP+F EQA   ++L TGIKV+DLL P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:   63 RSEKVSATGKPISVPVGKGTLGRIMDVLGEPVDEKGAVETEERWGIHRSAPSFAEQAGGAELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIATEH 169          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_VIBVY (ATP synthase subunit beta OS=Vibrio vulnificus (strain YJ016) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.409e-33
Identity = 65/107 (60.75%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V+NTG+PI+VPVG  TLGRIMNV+G+ IDE+G++  E    IHR AP++ EQ+   ++L TG+KV+DL+ P+ +GGKIGLFGGAGVGKTV +MELINN+A  H
Sbjct:   65 RGVEVVNTGAPISVPVGTKTLGRIMNVLGDAIDERGEIGAEELYSIHRPAPSYEEQSNATELLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMMELINNIALQH 171          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_VIBVU (ATP synthase subunit beta OS=Vibrio vulnificus GN=atpD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.409e-33
Identity = 65/107 (60.75%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V+NTG+PI+VPVG  TLGRIMNV+G+ IDE+G++  E    IHR AP++ EQ+   ++L TG+KV+DL+ P+ +GGKIGLFGGAGVGKTV +MELINN+A  H
Sbjct:   65 RGVEVVNTGAPISVPVGTKTLGRIMNVLGDAIDERGEIGAEELYSIHRPAPSYEEQSNATELLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMMELINNIALQH 171          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_SOLUE (ATP synthase subunit beta OS=Solibacter usitatus (strain Ellin6076) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.409e-33
Identity = 64/107 (59.81%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG + ++ G P+ VPVG  TLGR++NVIGEP+DE G +  + + PIHR AP+F +Q+T  ++  TGIKV+DL+ PY RGGKIGLFGGAGVGKTV+I ELINN+A  H
Sbjct:   76 RGMQAISLGHPVEVPVGPETLGRVLNVIGEPVDEMGPVNAKKHYPIHRPAPSFEDQSTRLEMFETGIKVIDLIEPYLRGGKIGLFGGAGVGKTVIIQELINNLAMKH 182          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_NEIG2 (ATP synthase subunit beta OS=Neisseria gonorrhoeae (strain NCCP11945) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.409e-33
Identity = 67/107 (62.62%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V NTGSPITVPVG+ TLGRI++V+G P+DE G + T+    IH+ AP F E ++  ++L TGIKV+DLL P+ +GGK+GLFGGAGVGKTV +MELINN+AKAH
Sbjct:   63 RGMTVSNTGSPITVPVGKGTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169          
The following BLAST results are available for this feature:
BLAST of CX289577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BACV81.412e-3364.49ATP synthase subunit beta OS=Bacteroides vulgatus ... [more]
ATPB_ANEMR1.412e-3365.42ATP synthase subunit beta, plastid OS=Aneura mirab... [more]
ATPB_ACTSZ1.412e-3361.68ATP synthase subunit beta OS=Actinobacillus succin... [more]
ATPB_VIBAL1.845e-3361.68ATP synthase subunit beta OS=Vibrio alginolyticus ... [more]
ATPB_ALISL1.845e-3362.62ATP synthase subunit beta OS=Aliivibrio salmonicid... [more]
ATPB_ALHEH1.845e-3362.62ATP synthase subunit beta OS=Alkalilimnicola ehrli... [more]
ATPB_VIBVY2.409e-3360.75ATP synthase subunit beta OS=Vibrio vulnificus (st... [more]
ATPB_VIBVU2.409e-3360.75ATP synthase subunit beta OS=Vibrio vulnificus GN=... [more]
ATPB_SOLUE2.409e-3359.81ATP synthase subunit beta OS=Solibacter usitatus (... [more]
ATPB_NEIG22.409e-3362.62ATP synthase subunit beta OS=Neisseria gonorrhoeae... [more]

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Properties
Property NameValue
Genbank descriptionC02014H02SK IF1 Citrus clementina cDNA clone C02014H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289577 ID=CX289577; Name=CX289577; organism=Citrus clementina; type=EST; length=329bp
TCGGCACGAGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACC
TGTGGGGAGAGTTACCCTGGGTCGTATTATGAATGTCATTGGAGAGCCTA
TTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCATCCACAGA
GAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCAC
TGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAGA
TCGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAA
CTTATTAACAATGTTGCGAAGGCTCATGG
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