CX289577

Overview
NameCX289577
Unique NameCX289577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length329
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_NEIG1 (ATP synthase subunit beta OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.409e-33
Identity = 67/107 (62.62%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V NTGSPITVPVG+ TLGRI++V+G P+DE G + T+    IH+ AP F E ++  ++L TGIKV+DLL P+ +GGK+GLFGGAGVGKTV +MELINN+AKAH
Sbjct:   63 RGMTVSNTGSPITVPVGKGTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_DICDH (ATP synthase subunit beta, chloroplastic OS=Dictyota dichotoma GN=atpB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.409e-33
Identity = 71/107 (66.36%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++T +PI VPVG+ TLGRI NV+G+ +D       E  LPIHR AP+F +  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   76 RGVEVIDTQAPILVPVGKATLGRIFNVLGQTVDNIEIGTGEDRLPIHRPAPSFTDLETKPAIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 182
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_DEHE1 (ATP synthase subunit beta OS=Dehalococcoides ethenogenes (strain 195) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.409e-33
Identity = 66/107 (61.68%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++T  P++VPVGR TLGRI NV+GEP+D +GD+K E  +PIHR APA  E  +  Q+L TG+KV+DL+AP+ RGGKIG  GGAGVGKTVLI ELI N+A  H
Sbjct:   65 RGAEVIDTKRPLSVPVGRNTLGRIFNVLGEPLDNRGDVKAEKTMPIHRSAPAMDELESSAQVLETGLKVIDLIAPFARGGKIGALGGAGVGKTVLIQELIRNIATEH 171
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BURVG (ATP synthase subunit beta OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.409e-33
Identity = 66/107 (61.68%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V NT  PI+VPVG+ TLGRIM+V+G PIDE G +++EH   IH++APAF E +   ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELINN+AK H
Sbjct:   68 RGLTVKNTAKPISVPVGKPTLGRIMDVLGRPIDEAGPIESEHTRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEH 174
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BURCE (ATP synthase subunit beta OS=Burkholderia cepacia GN=atpD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.409e-33
Identity = 66/107 (61.68%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V NT  PI+VPVG+ TLGRIM+V+G PIDE G +++EH   IH++APAF E +   ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELINN+AK H
Sbjct:   68 RGLTVKNTSKPISVPVGKPTLGRIMDVLGRPIDEAGPIESEHTRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEH 174
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BURA4 (ATP synthase subunit beta OS=Burkholderia ambifaria (strain MC40-6) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.409e-33
Identity = 66/107 (61.68%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V NT  PI+VPVG+ TLGRIM+V+G PIDE G +++EH   IH++APAF E +   ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELINN+AK H
Sbjct:   68 RGLTVKNTAKPISVPVGKPTLGRIMDVLGRPIDEAGPIESEHTRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEH 174
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_MANSM (ATP synthase subunit beta OS=Mannheimia succiniciproducens (strain MBEL55E) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.146e-33
Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V NTG PI+VPVG  TLGRIMNV+GEP+DE+G +  E    IHREAP++ EQ+   ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:   63 RGLSVSNTGKPISVPVGTKTLGRIMNVLGEPVDEQGPIGAEEEWAIHREAPSYEEQSNSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 169
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_LEPBL (ATP synthase subunit beta OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.146e-33
Identity = 69/107 (64.49%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ V NTG PI+VPVG  TLGRI NV+G+ IDE   +  +   PIHR APAF E  ++ ++  TGIKV+DLLAPY +GGK GLFGGAGVGKTVLI ELINN+AK H
Sbjct:   69 RGQEVTNTGKPISVPVGDATLGRIFNVLGKTIDEGPAITVKETRPIHRPAPAFDELTSKTEVFETGIKVIDLLAPYIKGGKTGLFGGAGVGKTVLIQELINNIAKQH 175
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_LEPBJ (ATP synthase subunit beta OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.146e-33
Identity = 69/107 (64.49%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ V NTG PI+VPVG  TLGRI NV+G+ IDE   +  +   PIHR APAF E  ++ ++  TGIKV+DLLAPY +GGK GLFGGAGVGKTVLI ELINN+AK H
Sbjct:   69 RGQEVTNTGKPISVPVGDATLGRIFNVLGKTIDEGPAITVKETRPIHRPAPAFDELTSKTEVFETGIKVIDLLAPYIKGGKTGLFGGAGVGKTVLIQELINNIAKQH 175
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_DESOH (ATP synthase subunit beta OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=atpD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.146e-33
Identity = 63/107 (58.88%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V +TG+PIT+PVG  +LGR++NV+G+P+D  G +  E  +PIHR AP F EQ T   +L TGIKV+DLL P+ RGGK+GLFGGAGVGKTV++ME++NN+A  H
Sbjct:   72 RGMPVKDTGAPITMPVGAASLGRVLNVVGKPVDGLGPVSREKTMPIHRPAPLFTEQDTSVNVLETGIKVIDLLVPFPRGGKMGLFGGAGVGKTVIMMEMVNNIAMQH 178
The following BLAST results are available for this feature:
BLAST of CX289577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_NEIG12.409e-3362.62ATP synthase subunit beta OS=Neisseria gonorrhoeae... [more]
ATPB_DICDH2.409e-3366.36ATP synthase subunit beta, chloroplastic OS=Dictyo... [more]
ATPB_DEHE12.409e-3361.68ATP synthase subunit beta OS=Dehalococcoides ethen... [more]
ATPB_BURVG2.409e-3361.68ATP synthase subunit beta OS=Burkholderia vietnami... [more]
ATPB_BURCE2.409e-3361.68ATP synthase subunit beta OS=Burkholderia cepacia ... [more]
ATPB_BURA42.409e-3361.68ATP synthase subunit beta OS=Burkholderia ambifari... [more]
ATPB_MANSM3.146e-3361.68ATP synthase subunit beta OS=Mannheimia succinicip... [more]
ATPB_LEPBL3.146e-3364.49ATP synthase subunit beta OS=Leptospira borgpeters... [more]
ATPB_LEPBJ3.146e-3364.49ATP synthase subunit beta OS=Leptospira borgpeters... [more]
ATPB_DESOH3.146e-3358.88ATP synthase subunit beta OS=Desulfococcus oleovor... [more]

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Properties
Property NameValue
Genbank descriptionC02014H02SK IF1 Citrus clementina cDNA clone C02014H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289577 ID=CX289577; Name=CX289577; organism=Citrus clementina; type=EST; length=329bp
TCGGCACGAGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACC
TGTGGGGAGAGTTACCCTGGGTCGTATTATGAATGTCATTGGAGAGCCTA
TTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCATCCACAGA
GAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCAC
TGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAGA
TCGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAA
CTTATTAACAATGTTGCGAAGGCTCATGG
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