CX289577

Overview
NameCX289577
Unique NameCX289577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length329
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_NITHX (ATP synthase subunit beta OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=atpD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.319e-39
Identity = 80/107 (74.77%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +K E    IH+EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:   69 RGQEVKDTGNPILVPVGVGTLGRIMNVIGEPVDEQGPVKAEDMRAIHQEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 175
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BRUSU (ATP synthase subunit beta OS=Brucella suis GN=atpD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.319e-39
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  114 RGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BRUSI (ATP synthase subunit beta OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=atpD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.319e-39
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  114 RGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BRUO2 (ATP synthase subunit beta OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=atpD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.319e-39
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  114 RGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BRUME (ATP synthase subunit beta OS=Brucella melitensis GN=atpD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.319e-39
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  114 RGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BRUC2 (ATP synthase subunit beta OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.319e-39
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  114 RGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BRUAB (ATP synthase subunit beta OS=Brucella abortus GN=atpD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.319e-39
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  114 RGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BRUA2 (ATP synthase subunit beta OS=Brucella abortus (strain 2308) GN=atpD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.319e-39
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  114 RGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BRASO (ATP synthase subunit beta OS=Bradyrhizobium sp. (strain ORS278) GN=atpD PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.722e-39
Identity = 79/107 (73.83%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ V +TG+PI VPVG  TLGRI+NVIGEPIDE G +K ++   IH+EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:   69 RGQEVTDTGAPIRVPVGEGTLGRIINVIGEPIDEAGPVKADNVRAIHQEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 175
[Close]
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_ROSDO (ATP synthase subunit beta OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpD PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.250e-39
Identity = 76/107 (71.03%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ V +T  PI++PVG  TLGRIMNV+GEPIDEKG + T+    IH+EAPAF EQ+T  ++L TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   66 RGQTVTDTDGPISIPVGNATLGRIMNVVGEPIDEKGPVATDETRSIHQEAPAFAEQSTSSEVLETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKVH 172
The following BLAST results are available for this feature:
BLAST of CX289577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_NITHX1.319e-3974.77ATP synthase subunit beta OS=Nitrobacter hamburgen... [more]
ATPB_BRUSU1.319e-3974.77ATP synthase subunit beta OS=Brucella suis GN=atpD... [more]
ATPB_BRUSI1.319e-3974.77ATP synthase subunit beta OS=Brucella suis (strain... [more]
ATPB_BRUO21.319e-3974.77ATP synthase subunit beta OS=Brucella ovis (strain... [more]
ATPB_BRUME1.319e-3974.77ATP synthase subunit beta OS=Brucella melitensis G... [more]
ATPB_BRUC21.319e-3974.77ATP synthase subunit beta OS=Brucella canis (strai... [more]
ATPB_BRUAB1.319e-3974.77ATP synthase subunit beta OS=Brucella abortus GN=a... [more]
ATPB_BRUA21.319e-3974.77ATP synthase subunit beta OS=Brucella abortus (str... [more]
ATPB_BRASO1.722e-3973.83ATP synthase subunit beta OS=Bradyrhizobium sp. (s... [more]
ATPB_ROSDO2.250e-3971.03ATP synthase subunit beta OS=Roseobacter denitrifi... [more]

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Properties
Property NameValue
Genbank descriptionC02014H02SK IF1 Citrus clementina cDNA clone C02014H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289577 ID=CX289577; Name=CX289577; organism=Citrus clementina; type=EST; length=329bp
TCGGCACGAGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACC
TGTGGGGAGAGTTACCCTGGGTCGTATTATGAATGTCATTGGAGAGCCTA
TTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCATCCACAGA
GAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCAC
TGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAGA
TCGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAA
CTTATTAACAATGTTGCGAAGGCTCATGG
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