CX289577

Overview
NameCX289577
Unique NameCX289577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length329
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_THAPS (ATP synthase subunit beta, chloroplastic OS=Thalassiosira pseudonana GN=atpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.011e-39
Identity = 78/107 (72.90%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG   ++ G+PITVPVG  TLGRI NVIGEP+DE+GD+  +  LPIHR+APAF E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   70 RGVEAVDLGAPITVPVGVPTLGRIFNVIGEPVDEQGDVVVDQTLPIHRDAPAFTELETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 176          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_SCEOB (ATP synthase subunit beta, chloroplastic OS=Scenedesmus obliquus GN=atpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.011e-39
Identity = 78/107 (72.90%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  VL+TG P+ VPVG+ TLGRI NV+GEP+D  G +K E  LPIHR APAFV+  T   I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   76 RGMEVLDTGKPLNVPVGKSTLGRIFNVLGEPVDNLGPVKNEESLPIHRTAPAFVDLDTRLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 182          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_ALKOO (ATP synthase subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpD PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.011e-39
Identity = 78/107 (72.90%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG    +TG PITVPVGR TLGRI NVIGEP+DEKG +  E   PIHR AP+F +QAT  +IL TGIKVVDL+APY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   68 RGMEAKDTGGPITVPVGRATLGRIFNVIGEPVDEKGAVAAEAKAPIHRPAPSFEDQATSTEILETGIKVVDLIAPYLKGGKIGLFGGAGVGKTVLIMELINNIAKEH 174          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_RICCN (ATP synthase subunit beta OS=Rickettsia conorii GN=atpD PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 6.545e-39
Identity = 78/107 (72.90%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP F  Q+TE  ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   68 RGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTHQSTECNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_RHOCA (ATP synthase subunit beta OS=Rhodobacter capsulatus GN=atpD PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 6.545e-39
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V +TG PITVPVG  TLGRI+NVIGEP+DE+GD+       IH+ AP F  Q+TE QILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   65 RGAAVSDTGGPITVPVGNATLGRILNVIGEPVDERGDVSKAEARAIHQPAPDFAAQSTESQILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 171          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_PHATR (ATP synthase subunit beta, chloroplastic OS=Phaeodactylum tricornutum GN=atpB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.545e-39
Identity = 77/107 (71.96%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG   ++ G+PI VPVG  TLGRI NVIGEP+DE+G++K +  LPIHR+APAF E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   71 RGVEAIDLGTPINVPVGTPTLGRIFNVIGEPVDEQGEVKYDETLPIHRDAPAFTELETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 177          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_XANP2 (ATP synthase subunit beta OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpD PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.548e-39
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V +TG+PI VPVG  TLGRIMNVIGEP+DE G ++ E    IH+ AP++ EQATE +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   66 RGLEVTDTGAPIQVPVGAGTLGRIMNVIGEPVDELGPIEAEATRGIHQPAPSYAEQATEAEILVTGIKVVDLLAPYAKGGKVGLFGGAGVGKTVLIMELINNVAKAH 172          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_OCHNE (ATP synthase subunit beta, chloroplastic OS=Ochrosphaera neapolitana GN=atpD PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.548e-39
Identity = 79/107 (73.83%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  VL+TGSPITVPVG  TLGRI NV+GEP+DE G    E  LPIHR AP+F E  T+  +  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   70 RGASVLDTGSPITVPVGVPTLGRIFNVLGEPVDELGPCNAESGLPIHRPAPSFTELETKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELINNIAKAH 176          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_FUSNN (ATP synthase subunit beta OS=Fusobacterium nucleatum subsp. nucleatum GN=atpD PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.548e-39
Identity = 74/107 (69.16%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TG PIT+PVG+  LGRI+NV+GEP+D +G L  E +LPIHREAP F +  TE +I  TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   64 RGMEVIDTGKPITIPVGKAVLGRILNVLGEPVDNQGPLNAETFLPIHREAPEFDDLETETEIFETGIKVIDLLAPYIKGGKIGLFGGAGVGKTVLIMELINNIAKGH 170          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_ERYLH (ATP synthase subunit beta OS=Erythrobacter litoralis (strain HTCC2594) GN=atpD PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.548e-39
Identity = 77/107 (71.96%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ V+NTG+ I+VPVG  TLGRIMNV+GEPID +G +  +   PIH EAPAFV+Q+T+  ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:   73 RGQEVINTGAQISVPVGPKTLGRIMNVVGEPIDMRGPVGADKANPIHAEAPAFVDQSTDAAILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGH 179          
The following BLAST results are available for this feature:
BLAST of CX289577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_THAPS5.011e-3972.90ATP synthase subunit beta, chloroplastic OS=Thalas... [more]
ATPB_SCEOB5.011e-3972.90ATP synthase subunit beta, chloroplastic OS=Scened... [more]
ATPB_ALKOO5.011e-3972.90ATP synthase subunit beta OS=Alkaliphilus oremland... [more]
ATPB_RICCN6.545e-3972.90ATP synthase subunit beta OS=Rickettsia conorii GN... [more]
ATPB_RHOCA6.545e-3971.96ATP synthase subunit beta OS=Rhodobacter capsulatu... [more]
ATPB_PHATR6.545e-3971.96ATP synthase subunit beta, chloroplastic OS=Phaeod... [more]
ATPB_XANP28.548e-3973.83ATP synthase subunit beta OS=Xanthobacter autotrop... [more]
ATPB_OCHNE8.548e-3973.83ATP synthase subunit beta, chloroplastic OS=Ochros... [more]
ATPB_FUSNN8.548e-3969.16ATP synthase subunit beta OS=Fusobacterium nucleat... [more]
ATPB_ERYLH8.548e-3971.96ATP synthase subunit beta OS=Erythrobacter litoral... [more]

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Properties
Property NameValue
Genbank descriptionC02014H02SK IF1 Citrus clementina cDNA clone C02014H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289577 ID=CX289577; Name=CX289577; organism=Citrus clementina; type=EST; length=329bp
TCGGCACGAGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACC
TGTGGGGAGAGTTACCCTGGGTCGTATTATGAATGTCATTGGAGAGCCTA
TTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCATCCACAGA
GAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCAC
TGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAGA
TCGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAA
CTTATTAACAATGTTGCGAAGGCTCATGG
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