CX289577

Overview
NameCX289577
Unique NameCX289577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length329
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_ACICJ (ATP synthase subunit beta OS=Acidiphilium cryptum (strain JF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.548e-39
Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 1
Query:    4 ARGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            ARG  V +TG  I VPVG  TLGRI+NVIGEPIDE+G + T    PIHR+AP+F EQAT  +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:   66 ARGDEVRDTGEAIAVPVGPETLGRILNVIGEPIDERGPIPTTRTAPIHRQAPSFDEQATSAEILVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELINNIAKGH 173          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB2_DINSH (ATP synthase subunit beta 2 OS=Dinoroseobacter shibae (strain DFL 12) GN=atpD2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.548e-39
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V +TG PIT+PVG  TLGRIMNVIGEPIDEKG ++      IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   66 RGAEVTDTGGPITIPVGNATLGRIMNVIGEPIDEKGPVEASESRAIHQPAPEFSEQSTGSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 172          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_CARHZ (ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.116e-38
Identity = 72/107 (67.29%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG +V++TG+PITVPVGR  LGR++NV+GEPID KG ++++HY PIHR AP   EQ+T  +IL TGIKV+DLL P+ +GGKIGLFGGAGVGKTV++MELINN+AK H
Sbjct:   73 RGMKVVDTGAPITVPVGRPVLGRLLNVLGEPIDGKGPVESDHYYPIHRPAPPLEEQSTRAEILETGIKVIDLLVPFLKGGKIGLFGGAGVGKTVIVMELINNIAKQH 179          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_BART1 (ATP synthase subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpD PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.116e-38
Identity = 77/107 (71.96%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ+V++TG+ I+VPVG  TLGRIMNVIGEP+D  G + +     IH+EAP +VEQ+T  +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:  129 RGQKVVDTGAQISVPVGEATLGRIMNVIGEPVDNVGPIASTKTRSIHQEAPEYVEQSTVSEILVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKAH 235          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_RICTY (ATP synthase subunit beta OS=Rickettsia typhi GN=atpD PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.458e-38
Identity = 77/107 (71.96%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TG+PI +PVG  TLGRIMNV+GEPID KG++K+     I++ AP F+ Q+TE+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   68 RGLEVIDTGNPIHIPVGIATLGRIMNVVGEPIDGKGEIKSSTISSIYKPAPDFINQSTERDILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_RICPR (ATP synthase subunit beta OS=Rickettsia prowazekii GN=atpD PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 1.458e-38
Identity = 77/107 (71.96%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TG+PI +PVG  TLGRIMNV+GEPID KG++K+     I++ AP F+ Q+TE+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   68 RGLEVIDTGNPIRIPVGTETLGRIMNVVGEPIDGKGEIKSATISSIYKPAPDFINQSTERDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_RICBR (ATP synthase subunit beta OS=Rickettsia bellii (strain RML369-C) GN=atpD PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.458e-38
Identity = 77/107 (71.96%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TGSPI++PVG  TLGRIMNV+GEPID KG +K      I++ AP+F +Q+T++ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   68 RGMEVVDTGSPISIPVGIETLGRIMNVVGEPIDGKGKIKGSSISSIYKSAPSFTQQSTDRNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_RICB8 (ATP synthase subunit beta OS=Rickettsia bellii (strain OSU 85-389) GN=atpD PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.458e-38
Identity = 77/107 (71.96%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TGSPI++PVG  TLGRIMNV+GEPID KG +K      I++ AP+F +Q+T++ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   68 RGMEVVDTGSPISIPVGIETLGRIMNVVGEPIDGKGKIKGSSISSIYKSAPSFTQQSTDRNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSM (ATP synthase subunit beta OS=Magnetococcus sp. (strain MC-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.458e-38
Identity = 77/107 (71.96%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V +TG  I VPVGR TLGRI+NV+GEP DEKG ++T   LPIHR APAF +QAT  +IL TGIKV+DLLAPY +GGK+GLFGGAGVGKTVLIMELINNVA+ H
Sbjct:   67 RGMEVTDTGDTIRVPVGRQTLGRILNVVGEPQDEKGPVETTETLPIHRPAPAFAQQATSAEILETGIKVIDLLAPYAKGGKVGLFGGAGVGKTVLIMELINNVAQEH 173          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_ODOSI (ATP synthase subunit beta, chloroplastic OS=Odontella sinensis GN=atpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.904e-38
Identity = 78/107 (72.90%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG    + G PI+VPVG  TLGRI NVIGEP+DE+GD+  +  LPIHREAPAF E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   71 RGVEARDLGGPISVPVGISTLGRIFNVIGEPVDEQGDVSYDETLPIHREAPAFTELETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 177          
The following BLAST results are available for this feature:
BLAST of CX289577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_ACICJ8.548e-3973.15ATP synthase subunit beta OS=Acidiphilium cryptum ... [more]
ATPB2_DINSH8.548e-3971.96ATP synthase subunit beta 2 OS=Dinoroseobacter shi... [more]
ATPB_CARHZ1.116e-3867.29ATP synthase subunit beta OS=Carboxydothermus hydr... [more]
ATPB_BART11.116e-3871.96ATP synthase subunit beta OS=Bartonella tribocorum... [more]
ATPB_RICTY1.458e-3871.96ATP synthase subunit beta OS=Rickettsia typhi GN=a... [more]
ATPB_RICPR1.458e-3871.96ATP synthase subunit beta OS=Rickettsia prowazekii... [more]
ATPB_RICBR1.458e-3871.96ATP synthase subunit beta OS=Rickettsia bellii (st... [more]
ATPB_RICB81.458e-3871.96ATP synthase subunit beta OS=Rickettsia bellii (st... [more]
ATPB_MAGSM1.458e-3871.96ATP synthase subunit beta OS=Magnetococcus sp. (st... [more]
ATPB_ODOSI1.904e-3872.90ATP synthase subunit beta, chloroplastic OS=Odonte... [more]

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Properties
Property NameValue
Genbank descriptionC02014H02SK IF1 Citrus clementina cDNA clone C02014H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289577 ID=CX289577; Name=CX289577; organism=Citrus clementina; type=EST; length=329bp
TCGGCACGAGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACC
TGTGGGGAGAGTTACCCTGGGTCGTATTATGAATGTCATTGGAGAGCCTA
TTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCATCCACAGA
GAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCAC
TGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAGA
TCGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAA
CTTATTAACAATGTTGCGAAGGCTCATGG
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