CX289577

Overview
NameCX289577
Unique NameCX289577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length329
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_KLULA (ATP synthase subunit beta, mitochondrial OS=Kluyveromyces lactis GN=ATP2 PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.904e-38
Identity = 76/107 (71.03%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG+ V +TG+PI+VPVGR TLGRI+NVIGEPIDE+G + ++   PIH + P FVEQ+T  ++L TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAH
Sbjct:   99 RGENVSDTGAPISVPVGRETLGRIINVIGEPIDERGPINSKMRKPIHADPPLFVEQSTAAEVLETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAH 205          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_OLTVI (ATP synthase subunit beta, chloroplastic OS=Oltmannsiellopsis viridis GN=atpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.487e-38
Identity = 77/107 (71.96%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TG+P+TVPVG  TLGRI NV+GEP+D  GD+  E  LPIHR AP FV+  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   77 RGMDVVDTGAPLTVPVGTSTLGRIFNVLGEPVDNLGDVSNEGGLPIHRPAPLFVDLDTQLSIFKTGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 183          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_MESSB (ATP synthase subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=atpD PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.487e-38
Identity = 78/107 (72.90%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ V +TG+PI+VPVG   LGRI+NVIGEP+DE G +    +  IH+ AP +VEQ+TE QILVTGIKV+DLLAPY RGGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:  112 RGQEVRDTGAPISVPVGPEMLGRIINVIGEPVDEAGPITATEFRGIHQPAPEYVEQSTEAQILVTGIKVLDLLAPYARGGKIGLFGGAGVGKTVLIQELINNVAKAH 218          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_SPHWW (ATP synthase subunit beta OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpD PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.248e-38
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ V +TGS I VPVG  TLGRI+NVIGEPIDE+G +      PIH EAP FV+Q+T+  ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:   71 RGQEVTDTGSQIRVPVGPQTLGRILNVIGEPIDERGPVNATQTSPIHAEAPLFVDQSTDASILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGH 177          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSF (ATP synthase subunit beta OS=Geobacter sp. (strain FRC-32) GN=atpD PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.248e-38
Identity = 77/107 (71.96%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ VL+TG  I+VPVGR TLGRI+NVIGEP+DE G +  +    IHREAP FV+Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   72 RGQAVLDTGKQISVPVGRKTLGRILNVIGEPVDEMGPVNADKEYGIHREAPEFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQH 178          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_GRATL (ATP synthase subunit beta, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=atpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.242e-38
Identity = 76/107 (71.03%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V +TG+PITVPVG  TLGRI NV+GEP+D  GD+++E  LPIHR AP+F +  T+  I  TGIKVVDLLAPY++GGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   71 RGIEVTDTGAPITVPVGIPTLGRIFNVLGEPVDNLGDIQSEDSLPIHRAAPSFTQLETKPSIFETGIKVVDLLAPYRKGGKIGLFGGAGVGKTVLIMELINNIAKAH 177          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_SORBI (ATP synthase subunit beta, chloroplastic OS=Sorghum bicolor GN=atpB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.541e-38
Identity = 76/107 (71.03%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TG+P++VPVG  TLGRI NV+GEPID  G + T    PIHR APAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   87 RGMEVIDTGTPLSVPVGGATLGRIFNVLGEPIDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_SACOF (ATP synthase subunit beta, chloroplastic OS=Saccharum officinarum GN=atpB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.541e-38
Identity = 76/107 (71.03%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TG+P++VPVG  TLGRI NV+GEPID  G + T    PIHR APAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   87 RGMEVIDTGTPLSVPVGGATLGRIFNVLGEPIDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_SACHY (ATP synthase subunit beta, chloroplastic OS=Saccharum hybrid GN=atpB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.541e-38
Identity = 76/107 (71.03%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TG+P++VPVG  TLGRI NV+GEPID  G + T    PIHR APAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   87 RGMEVIDTGTPLSVPVGGATLGRIFNVLGEPIDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193          
BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_RICCK (ATP synthase subunit beta OS=Rickettsia canadensis (strain McKiel) GN=atpD PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.541e-38
Identity = 76/107 (71.03%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG  V++TGSPI +PVG  TLGRIMNV+GE ID KG++K+ +   I++ AP+F  Q++E+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   68 RGLEVVDTGSPICIPVGTATLGRIMNVVGESIDGKGEIKSSNVSSIYKPAPSFTNQSSERTILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174          
The following BLAST results are available for this feature:
BLAST of CX289577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_KLULA1.904e-3871.03ATP synthase subunit beta, mitochondrial OS=Kluyve... [more]
ATPB_OLTVI2.487e-3871.96ATP synthase subunit beta, chloroplastic OS=Oltman... [more]
ATPB_MESSB2.487e-3872.90ATP synthase subunit beta OS=Mesorhizobium sp. (st... [more]
ATPB_SPHWW3.248e-3871.96ATP synthase subunit beta OS=Sphingomonas wittichi... [more]
ATPB_GEOSF3.248e-3871.96ATP synthase subunit beta OS=Geobacter sp. (strain... [more]
ATPB_GRATL4.242e-3871.03ATP synthase subunit beta, chloroplastic OS=Gracil... [more]
ATPB_SORBI5.541e-3871.03ATP synthase subunit beta, chloroplastic OS=Sorghu... [more]
ATPB_SACOF5.541e-3871.03ATP synthase subunit beta, chloroplastic OS=Saccha... [more]
ATPB_SACHY5.541e-3871.03ATP synthase subunit beta, chloroplastic OS=Saccha... [more]
ATPB_RICCK5.541e-3871.03ATP synthase subunit beta OS=Rickettsia canadensis... [more]

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Properties
Property NameValue
Genbank descriptionC02014H02SK IF1 Citrus clementina cDNA clone C02014H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289577 ID=CX289577; Name=CX289577; organism=Citrus clementina; type=EST; length=329bp
TCGGCACGAGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACC
TGTGGGGAGAGTTACCCTGGGTCGTATTATGAATGTCATTGGAGAGCCTA
TTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCATCCACAGA
GAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCAC
TGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAGA
TCGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAA
CTTATTAACAATGTTGCGAAGGCTCATGG
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