CX289579

Overview
NameCX289579
Unique NameCX289579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHELP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.045e-27
Identity = 64/157 (40.76%), Postives = 95/157 (60.51%), Query Frame = 3
Query:    3 ELKLPSHYLVSPPEID--RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            ++K P  Y    P +D   T GE L +NG      SET K+ HVTFF+NG +   F+   E+ + I S    T+++QP+M + E+ ++  +AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  +++A+ KV G  L+TADHGNAE M
Sbjct:  301 DIKAPVAY----PSVDLVNTLGEVLQNNGKTQLRISETEKYAHVTFFFNGGKEEPFEG--EDRILIQSPKVATYDLQPEMSSTELTDKLVEAIESTQYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVEALAKVDGECLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_IDILO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Idiomarina loihiensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.045e-27
Identity = 67/155 (43.23%), Postives = 95/155 (61.29%), Query Frame = 3
Query:    6 LKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            L+ PS +   PPE ++   GE+L  +       SET K+ HVTFF++G R   F+   E+ V IPS    T+++QP+M + ++ +    AI S+ F  V  N PN DMVGHTG+ +A V AC+A D +V  ++ A+E VGG  L+TADHGNAE M
Sbjct:  299 LEAPSAF---PPEPLNNVLGEWLAKHDKTQLRISETEKYAHVTFFFSGGREQEFEG--EKRVLIPSPKVKTYDLQPEMSSEQLTDELVAAIESQAFDVVICNYPNGDMVGHTGNFDAAVKACEAVDHSVGRVVSALEAVGGECLITADHGNAEQM 448          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.605e-27
Identity = 62/159 (38.99%), Postives = 90/159 (56.60%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSG 488
            +P      P  ++ T GE+L   G      SET K+ HVTFF+NG     F     + V  P  +  T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG  EA V AC+A DE +  +++AI++V G  L+TADHGNAE M+     G
Sbjct:  300 IPLQCAFGPASLENTYGEWLSKAGKTQLRISETEKYAHVTFFFNGGVENEFPGEERQLVASPKVA--TYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNGDMVGHTGVYEAAVKACEAVDECIGRVVEAIKEVDGQLLITADHGNAEMMIDPETGG 456          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.605e-27
Identity = 62/159 (38.99%), Postives = 90/159 (56.60%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSG 488
            +P      P  ++ T GE+L   G      SET K+ HVTFF+NG     F     + V  P  +  T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG  EA V AC+A DE +  +++AI++V G  L+TADHGNAE M+     G
Sbjct:  300 IPLQCAFGPASLENTYGEWLSKAGKTQLRISETEKYAHVTFFFNGGVENEFPGEERQLVASPKVA--TYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNGDMVGHTGVYEAAVKACEAVDECIGRVVEAIKEVDGQLLITADHGNAEMMIDPETGG 456          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_VIBC3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.605e-27
Identity = 62/159 (38.99%), Postives = 90/159 (56.60%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSG 488
            +P      P  ++ T GE+L   G      SET K+ HVTFF+NG     F     + V  P  +  T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG  EA V AC+A DE +  +++AI++V G  L+TADHGNAE M+     G
Sbjct:  300 IPLQCAFGPASLENTYGEWLSKAGKTQLRISETEKYAHVTFFFNGGVENEFPGEERQLVASPKVA--TYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNGDMVGHTGVYEAAVKACEAVDECIGRVVEAIKEVDGQLLITADHGNAEMMIDPETGG 456          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHEHH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella halifaxensis (strain HAW-EB4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.124e-26
Identity = 59/142 (41.55%), Postives = 90/142 (63.38%), Query Frame = 3
Query:   42 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            ++  T GE L +  +     SET K+ HVTFF+NG +   F    E+ + + S    T+++QP+M ++E+ ++  +AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  I++A+EKVGG  L+TADHGNAE M
Sbjct:  312 DLVNTLGETLQNRDLTQLRISETEKYAHVTFFFNGGKEEPFKG--EDRILVQSPKVATYDLQPEMSSVELTDKLVEAIESTQYDVIICNYPNGDMVGHTGNFDAAVKACEAVDSCIGRIVEALEKVGGECLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_PSEAE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.124e-26
Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            +P+     P  +    GEYL  +G      +ET K+ HVTFF++G R   ++   EE + IPS    T+++QP+M A E+ +R  +AI  +R+  + VN  N DMVGHTG  EA V A +  D  +  I++A++KVGG  L+TADHGN E M
Sbjct:  303 IPAPCAFPPEPLTNVLGEYLAKHGKTQLRIAETEKYAHVTFFFSGGREEPYEG--EERILIPSPKVATYDLQPEMSAPEVTDRIVEAIEQQRYDVIVVNYANGDMVGHTGVFEAAVKAVECLDTCMGRIVEALDKVGGEALITADHGNVEQM 452          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_PSEAB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.124e-26
Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            +P+     P  +    GEYL  +G      +ET K+ HVTFF++G R   ++   EE + IPS    T+++QP+M A E+ +R  +AI  +R+  + VN  N DMVGHTG  EA V A +  D  +  I++A++KVGG  L+TADHGN E M
Sbjct:  303 IPAPCAFPPEPLTNVLGEYLAKHGKTQLRIAETEKYAHVTFFFSGGREEPYEG--EERILIPSPKVATYDLQPEMSAPEVTDRIVEAIEQQRYDVIVVNYANGDMVGHTGVFEAAVKAVECLDTCMGRIVEALDKVGGEALITADHGNVEQM 452          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa (strain PA7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.124e-26
Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            +P+     P  +    GEYL  +G      +ET K+ HVTFF++G R   ++   EE + IPS    T+++QP+M A E+ +R  +AI  +R+  + VN  N DMVGHTG  EA V A +  D  +  I++A++KVGG  L+TADHGN E M
Sbjct:  303 IPAPCAFPPEPLTNVLGEYLAKHGKTQLRIAETEKYAHVTFFFSGGREEPYEG--EERILIPSPKVATYDLQPEMSAPEVTDRIVEAIEQQRYDVIVVNYANGDMVGHTGVFEAAVKAVECLDTCMGRIVEALDKVGGEALITADHGNVEQM 452          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB9 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS195) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.468e-26
Identity = 64/156 (41.03%), Postives = 93/156 (59.62%), Query Frame = 3
Query:    3 ELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            ++K P  Y   P E +  T GE L   G      SET K+ HVTFF+NG +   F+   E+ + I S    T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  ++DA+ KVGG  ++TADHGNAE M
Sbjct:  301 DIKAPIAY---PSENLVNTLGEVLQKQGRTQLRISETEKYAHVTFFFNGGKEEPFEG--EDRILINSPKVATYDLQPEMSSAELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGCVVDALAKVGGECIITADHGNAEQM 451          
The following BLAST results are available for this feature:
BLAST of CX289579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
GPMI_SHELP5.045e-2740.762,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_IDILO5.045e-2743.232,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCM8.605e-2738.992,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCH8.605e-2738.992,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBC38.605e-2738.992,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEHH1.124e-2641.552,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEAE1.124e-2640.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEAB1.124e-2640.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEA71.124e-2640.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB91.468e-2641.032,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC02014H04SK IF1 Citrus clementina cDNA clone C02014H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289579 ID=CX289579; Name=CX289579; organism=Citrus clementina; type=EST; length=488bp
GGGAGTTGAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGAC
AGAACATCTGGTGAATATTTAGTGCATAATGGTGTCCGGACTTTTGCTTG
CAGTGAGACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACC
GCTCTGGGTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGT
GATTCTGGAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGAT
TGCTGAAAGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGTGC
GTGTTAACCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAG
GCAACAGTGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCAT
TGATGCAATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATG
GCAATGCTGAGGACATGGTCAAGAGGAACAAATCTGGG
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