CX289579

Overview
NameCX289579
Unique NameCX289579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_UREP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 51/154 (33.12%), Postives = 85/154 (55.19%), Query Frame = 3
Query:   27 LVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRF-HQVR-VNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNK 482
            L     ++ T G+    + ++    +ET K+ H++FF++G  + Y+ S   +Y+ IPS    T+++ P+M A  I     K I+   F H V  VN  N DMVGH+G+++ T+ A  + D  ++ + D  EK  G+ ++T DHGNAE M+   K
Sbjct:  295 LFEKQNLNNTLGDVFNKHQIKEARIAETEKYAHISFFFDGGVNKYY-STKTQYL-IPSQKVATYDLCPQMSAHLIT----KTIIDHYFDHDVFIVNYANPDMVGHSGNMQQTIEAILSVDHEIRKLYDFFEKNNGVLMITGDHGNAEMMLDDQK 442          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_HELPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori (strain HPAG1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 52/157 (33.12%), Postives = 79/157 (50.32%), Query Frame = 3
Query:   15 PSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKS 485
            P   L     +  T  E +  + +     +ET K+ HVTFF NG     F +  E  V IPS    T++++P+M A E+     +  +      + VN  N DMVGHTG+ EA+V A +A D  +  I+   +K+    L+T+DHGN E M   N++
Sbjct:  287 PYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKN--ENRVLIPSPKVTTYDLKPEMSAKEVTLAVLEQ-MKLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDACLGEILSLAKKLDYAMLLTSDHGNCEHMKDENQN 440          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_HALSA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halobacterium salinarium GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 46/138 (33.33%), Postives = 69/138 (50.00%), Query Frame = 3
Query:   54 TSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            T G  L  +       +E+ K+ HVT+F NG R   FD      V+ P     T++ QP M A  + +    A+       + +N  N DMVGHTGD +A + A +A D  +  ++ A+   G    +TADHGNA+D+
Sbjct:  311 TLGAVLAAHDHTQLRVAESEKYAHVTYFLNGGREVAFDGETRTIVDSPDVP--TYDEQPAMSAPAVTDTVLDALAGDDPDVLVLNYANPDMVGHTGDFDAAIEAVEAVDRELGRLVPALNDAGAHAFLTADHGNADDL 446          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mobile GN=gpmI PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 3
Query:   42 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAE 461
            +I    G  L  NG+     +ET K+ HVTFF++G     +++  EE + I S    +F   P+M A  I +     +   ++  + +N  N DMVGHTG+++AT+ A +  D     I+ AIEK      +TADHGNAE
Sbjct:  309 KITNPLGNILAKNGLSQLRIAETQKYAHVTFFFDGGNDVLYEN--EERILIDSVKADSFADYPEMSAAGITDTLIANL--GKYDVIILNYANPDMVGHTGNLKATIKALEFLDFQYGKILKAIEKTNHTLFITADHGNAE 444          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_ARCB4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Arcobacter butzleri (strain RM4018) GN=gpmI PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15
Identity = 51/139 (36.69%), Postives = 75/139 (53.96%), Query Frame = 3
Query:   54 TSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEY-VEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            T  E + + G+     +ET K+ HVTFF+NG   G  +  L E  V IPS    T++++P+M A E+    + A ++     + VN  N DMVGHTG  EA V A +A D  +  I +  +K     ++T+DHGN E M
Sbjct:  300 TLAEVISNAGLSQLHTAETEKYAHVTFFFNG---GVEEPVLNESRVLIPSPQVATYDLKPEMSAPEVGSAVRTA-MNNNIDFIVVNFANGDMVGHTGVFEAAVKAVEAVDFELGQIFELAKKQNYNIILTSDHGNCEMM 434          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_HELPY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 51/157 (32.48%), Postives = 78/157 (49.68%), Query Frame = 3
Query:   15 PSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKS 485
            P   L     +  T  E +  + +     +ET K+ HVTFF NG     F +  E  V I S    T++++P+M A E+     +  +      + VN  N DMVGHTG+ EA+V A +A D  +  I+   +K+    L+T+DHGN E M   N++
Sbjct:  287 PYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKN--ENRVLIQSPKVTTYDLKPEMSAKEVTLAVLEQ-MKLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDACLGEILSLAKKLDYAMLLTSDHGNCERMKDENQN 440          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_HELAH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter acinonychis (strain Sheeba) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 53/160 (33.12%), Postives = 80/160 (50.00%), Query Frame = 3
Query:   15 PSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRR---FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKS 485
            P   L     I  T  E +    +     +ET K+ HVTFF NG     F +  E  V I S    T++++P+M A E+      A+L +       + VN  N DMVGHTG+ EA+V A +A D ++  I+   +++    L+T+DHGN E M   N++
Sbjct:  288 PYPILFPKESIQNTLAEVVSECNLTQSHIAETEKYAHVTFFINGGVETPFKN--ENRVLIQSPKVTTYDLKPEMSAKEVT----LAVLEQMRLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDTSLGEILSLAKELNYAMLLTSDHGNCEHMKDENQN 441          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_HELPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori J99 GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.431e-13
Identity = 51/164 (31.10%), Postives = 78/164 (47.56%), Query Frame = 3
Query:   15 PSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVR-------VNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKS 485
            P   L     +  T  E +  + +     +ET K+ HVTFF NG     F +  E  V I S    T++++P+M A        K +      Q+R       VN  N DMVGHTG+ EA++ A +A D  +  I+   +++    L+T+DHGN E M   N++
Sbjct:  287 PYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKN--ENRVLIQSPKVTTYDLKPEMSA--------KGVTLAVLEQMRLGTDLIIVNFANGDMVGHTGNFEASIKAVEAVDACLGEILSLAKELDYAMLLTSDHGNCERMKDENQN 440          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_MYCH2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain 232) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 48/144 (33.33%), Postives = 75/144 (52.08%), Query Frame = 3
Query:   45 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ-----PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAE 461
            ++   G+ +   G R    +ET K+ HVTFF +G      +  LE    I  DS     VQ     P+M A+EI ++  +  + +++  + +N  N DMVGHTGD++AT+ A +  D  +  I    E+    + +TADHGNAE
Sbjct:  315 VENPLGKLICMAGFRQLRLAETQKYAHVTFFVDGG----VELELENSDRILIDS---LKVQSYADFPQMSAVEITDKLLE--VGQKYDFIIMNFANPDMVGHTGDLKATIKAVEILDFQIGRICKWAEEKNFDFFITADHGNAE 449          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_MYCHJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 3
Query:   45 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ-----PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAE 461
            ++   G+ +   G R    +ET K+ HVTFF +G      +  LE    I  DS     VQ     P+M A+EI ++  +  + + +  + +N  N DMVGHTGD++AT+ A +  D  +  I    E+    + +TADHGNAE
Sbjct:  308 VENPLGKLISMAGFRQLRLAETQKYAHVTFFVDGG----VELELENSDRILIDS---LKVQSYADFPQMSAVEITDKLLE--VGQNYDFIIMNFANPDMVGHTGDLKATIKAVEILDFQIGRICKWAEEKNFDFFITADHGNAE 442          
The following BLAST results are available for this feature:
BLAST of CX289579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
GPMI_UREP24.006e-1633.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPH1.166e-1533.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALSA1.166e-1533.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMO2.597e-1535.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ARCB47.556e-1536.692,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPY1.289e-1432.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELAH3.750e-1433.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPJ2.431e-1331.102,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCH21.575e-1233.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCHJ3.510e-1233.332,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC02014H04SK IF1 Citrus clementina cDNA clone C02014H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289579 ID=CX289579; Name=CX289579; organism=Citrus clementina; type=EST; length=488bp
GGGAGTTGAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGAC
AGAACATCTGGTGAATATTTAGTGCATAATGGTGTCCGGACTTTTGCTTG
CAGTGAGACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACC
GCTCTGGGTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGT
GATTCTGGAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGAT
TGCTGAAAGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGTGC
GTGTTAACCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAG
GCAACAGTGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCAT
TGATGCAATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATG
GCAATGCTGAGGACATGGTCAAGAGGAACAAATCTGGG
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