CX289579

Overview
NameCX289579
Unique NameCX289579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_VIBPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio parahaemolyticus GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.917e-26
Identity = 62/151 (41.06%), Postives = 90/151 (59.60%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSG 488
            P  ++ T GE+L   G      SET K+ HVTFF+NG     F+    + V  P  +  T+++QP+M + E+ E+   AI S ++  +  N PN+DMVGHTG  EA   A +A DE+V  +++AI++VGG  L+TADHGNAE M+     G
Sbjct:  308 PASLENTYGEWLSKQGQTQLRISETEKYAHVTFFFNGGVENEFEGEERQLVASPKVA--TYDLQPEMSSPELTEKLVAAIKSGKYDTIICNYPNADMVGHTGVYEAAEKAIEALDESVGKVVEAIKEVGGQLLITADHGNAEMMIDPETGG 456          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHESR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.917e-26
Identity = 65/156 (41.67%), Postives = 94/156 (60.26%), Query Frame = 3
Query:    3 ELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            ++K P  Y   P E +  T GE L + G      SET K+ HVTFF+NG +   F  N E+ + I S    T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  ++DA+ KVGG  ++TADHGNAE M
Sbjct:  301 DIKAPIAY---PSENLVNTLGEVLQNRGRTQLRISETEKYAHVTFFFNGGKEEPF--NGEDRILINSPKVATYDLQPEMSSTELTDKLVAAIESAQYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVDALAKVGGECIITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHESM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.917e-26
Identity = 65/156 (41.67%), Postives = 94/156 (60.26%), Query Frame = 3
Query:    3 ELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            ++K P  Y   P E +  T GE L + G      SET K+ HVTFF+NG +   F  N E+ + I S    T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  ++DA+ KVGG  ++TADHGNAE M
Sbjct:  301 DIKAPIAY---PSENLVNTLGEVLQNRGRTQLRISETEKYAHVTFFFNGGKEEPF--NGEDRILINSPKVATYDLQPEMSSTELTDKLVAAIESAQYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVDALAKVGGECIITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHESA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain ANA-3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.917e-26
Identity = 65/156 (41.67%), Postives = 94/156 (60.26%), Query Frame = 3
Query:    3 ELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            ++K P  Y   P E +  T GE L + G      SET K+ HVTFF+NG +   F  N E+ + I S    T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  ++DA+ KVGG  ++TADHGNAE M
Sbjct:  301 DIKAPIAY---PSENLVNTLGEVLQNRGRTQLRISETEKYAHVTFFFNGGKEEPF--NGEDRILINSPKVATYDLQPEMSSTELTDKLVAAIESAQYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVDALAKVGGECIITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS185) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.504e-26
Identity = 64/156 (41.03%), Postives = 93/156 (59.62%), Query Frame = 3
Query:    3 ELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            ++K P  Y   P E +  T GE L   G      SET K+ HVTFF+NG +   F+   E+ + I S    T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  ++DA+ KVGG  ++TADHGNAE M
Sbjct:  301 DIKAPIAY---PSENLVNTLGEVLQKQGRTQLRISETEKYAHVTFFFNGGKEEPFEG--EDRILINSPKVATYDLQPEMSSAELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVDALAKVGGECIITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.504e-26
Identity = 64/156 (41.03%), Postives = 93/156 (59.62%), Query Frame = 3
Query:    3 ELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            ++K P  Y   P E +  T GE L   G      SET K+ HVTFF+NG +   F+   E+ + I S    T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  ++DA+ KVGG  ++TADHGNAE M
Sbjct:  301 DIKAPIAY---PSENLVNTLGEVLQKQGRTQLRISETEKYAHVTFFFNGGKEEPFEG--EDRILINSPKVATYDLQPEMSSAELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVDALAKVGGECIITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_VIBFM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain MJ11) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26
Identity = 61/152 (40.13%), Postives = 90/152 (59.21%), Query Frame = 3
Query:   33 SPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSG 488
            +P  ++ T GE+L   G      SET K+ HVTFF+NG     F+    + V  P  +  T+++QP+M A E+ E+   AI S ++  +  N PN DMVGHTG  +ATV A ++ DE +  +++AI++V G  L+TADHGNAE M+     G
Sbjct:  307 APASLENTYGEWLSKEGKTQLRISETEKYAHVTFFFNGGIEDEFEGEERQLVASPKVA--TYDLQPEMSAPELTEKLVAAIKSGKYDAIVCNFPNCDMVGHTGVYDATVKAVESLDECIGKVVEAIKEVDGQLLITADHGNAEMMIDPETGG 456          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHEDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26
Identity = 61/145 (42.07%), Postives = 88/145 (60.69%), Query Frame = 3
Query:   33 SPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            S  ++  T GE L + G      SET K+ HVTFF+NG +   F    E+ + IPS    T+++QP+M + E+ ++  +AI S ++  V  N PN DMVGHTG+ +A V AC+A D  +  ++ A+ KV G  L+TADHGNAE M
Sbjct:  309 SSSDLVNTLGETLQNLGKTQLRISETEKYAHVTFFFNGGKEDPFKG--EDRIMIPSPKVATYDLQPEMNSTELTDKLVEAIESAKYDVVICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVAALAKVNGECLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_THEEB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thermosynechococcus elongatus (strain BP-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.270e-26
Identity = 59/145 (40.69%), Postives = 85/145 (58.62%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMV 470
            P  +    GE +  +G++    +ET K+ HVT+F+NG     F    E+ + IPS    T++  P M AL + +  KKAI  + +  V VN  NSDMVGHTG + AT+ A +  D  V ++++A  KVGG  L+TADHGNAE M+
Sbjct:  304 PQNLSHILGEVIAEHGLKQLRAAETEKYAHVTYFFNGGLEEPFPG--EDRILIPSPMVTTYDQAPAMSALAVTQAVKKAIEKQEYALVVVNFANSDMVGHTGKLAATIQAIETVDRCVGVLVEAATKVGGTLLITADHGNAEYMI 446          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_PSYIN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychromonas ingrahamii (strain 37) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.270e-26
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 3
Query:   33 SPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMV 470
            S   +  T GE+L  +G      SET K+ HVTFF+NG     F    E+   I S S  T+++QP+M ++E+ E+   AI S ++  +  N PN DMVGHTG  +A V AC+A D  V  ++ A+++V G  L+TADHGNAE M+
Sbjct:  305 SSERLTNTLGEWLADHGKTQLRISETEKYAHVTFFFNGGVESEFKG--EDRTLIKSPSVATYDMQPEMSSIELTEKLVSAIKSTKYDVIICNYPNGDMVGHTGVYDAAVKACEAVDSCVGKVVAALKEVDGECLITADHGNAEQMI 448          
The following BLAST results are available for this feature:
BLAST of CX289579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
GPMI_VIBPA1.917e-2641.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESR1.917e-2641.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESM1.917e-2641.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESA1.917e-2641.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB82.504e-2641.032,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB52.504e-2641.032,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBFM3.270e-2640.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEDO3.270e-2642.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THEEB4.270e-2640.692,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSYIN4.270e-2641.782,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC02014H04SK IF1 Citrus clementina cDNA clone C02014H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289579 ID=CX289579; Name=CX289579; organism=Citrus clementina; type=EST; length=488bp
GGGAGTTGAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGAC
AGAACATCTGGTGAATATTTAGTGCATAATGGTGTCCGGACTTTTGCTTG
CAGTGAGACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACC
GCTCTGGGTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGT
GATTCTGGAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGAT
TGCTGAAAGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGTGC
GTGTTAACCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAG
GCAACAGTGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCAT
TGATGCAATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATG
GCAATGCTGAGGACATGGTCAAGAGGAACAAATCTGGG
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