CX289579

Overview
NameCX289579
Unique NameCX289579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHESW (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain W3-18-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.577e-26
Identity = 62/151 (41.06%), Postives = 91/151 (60.26%), Query Frame = 3
Query:   15 PSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            PS  LV+      T GE L + G      SET K+ HVTFF+NG +   F+   E+ + I S    T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  +++A+ KVGG  ++TADHGNAE M
Sbjct:  309 PSENLVN------TLGEVLQNRGRTQLRISETEKYAHVTFFFNGGKEEPFEG--EDRILINSPKVATYDLQPEMSSTELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVEALAKVGGECIITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.577e-26
Identity = 62/151 (41.06%), Postives = 91/151 (60.26%), Query Frame = 3
Query:   15 PSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            PS  LV+      T GE L + G      SET K+ HVTFF+NG +   F+   E+ + I S    T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  +++A+ KVGG  ++TADHGNAE M
Sbjct:  309 PSENLVN------TLGEVLQNRGRTQLRISETEKYAHVTFFFNGGKEEPFEG--EDRILINSPKVATYDLQPEMSSTELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVEALAKVGGECIITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHEON (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella oneidensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.577e-26
Identity = 62/155 (40.00%), Postives = 92/155 (59.35%), Query Frame = 3
Query:    3 ELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            ++K P  Y      +  T GE L + G      SET K+ HVTFF+NG +   F  N E+ + I S    T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  +++A+ KVGG  ++TADHGNAE M
Sbjct:  301 DIKAPIAY--PSDNLVNTLGEVLQNRGRTQLRISETEKYAHVTFFFNGGKEEPF--NGEDRILINSPKVATYDLQPEMSSTELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVEALAKVGGECIITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_VIBHB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.284e-26
Identity = 62/159 (38.99%), Postives = 91/159 (57.23%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSG 488
            +P      P  ++ T GE+L   G      SET K+ HVTFF+NG     F+    + V  P  +  T+++QP+M + E+ E+   AI S ++  +  N PN+DMVGHTG  EA   A +A DE+V  +++AI++V G  L+TADHGNAE M+     G
Sbjct:  300 IPLAIAFPPASLENTYGEWLSKQGQTQLRISETEKYAHVTFFFNGGIENEFEGEERQLVASPKVA--TYDMQPEMSSPELTEKMVAAIKSGKYDTIICNYPNADMVGHTGVYEAAEQAIEALDESVGKVVEAIKEVSGQMLITADHGNAEMMIDPETGG 456          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Paris) GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.284e-26
Identity = 60/144 (41.67%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  ++ T GE L  +G+     +ET K+ HVTFF+NG     F +  EE + +PS    T+++QP+M A E+ +    AI SR +H +  N  N+DMVGHTG+ EATV A +  D+ ++ +  A++  GG  L+TADHGNAE+M
Sbjct:  306 PVPLNNTLGEVLSSHGLSQLRIAETEKYAHVTFFFNGGCESVFTN--EERIMVPSPQVATYDLQPEMSAHELTKTLIAAINSRDYHVIICNYANADMVGHTGNFEATVQAIECLDQCMQQVWQALKNNGGKLLITADHGNAEEM 447          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_GLUOX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gluconobacter oxydans GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.284e-26
Identity = 60/141 (42.55%), Postives = 84/141 (59.57%), Query Frame = 3
Query:   45 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            +D   G+ +   G      +ET K+ HVT+F NG R   FD   EE + +PS    T+++QP+M A E+ ++A  AI S +F  + +N  N DMVGHTG + A + AC+  D+ +  I DAI K GG+ LVTADHGN E M
Sbjct:  310 LDDLLGDVVAKAGRTQLRMAETEKYPHVTYFLNGGREVQFDG--EERILVPSPKVATYDLQPEMSAPELTDKAVAAIESGKFDMIVLNFANPDMVGHTGSLSAAIKACETVDQGLGRINDAIVKAGGVLLVTADHGNCETM 448          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26
Identity = 59/142 (41.55%), Postives = 86/142 (60.56%), Query Frame = 3
Query:   42 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            ++  T GE L    +     SET K+ HVTFF+NG +   F    E+ + I S    T+++QP+M + E+ ++   AI S  +  +  N PN DMVGHTG+ +A V AC+A D  +  +++A+EKVGG  L+TADHGNAE M
Sbjct:  312 DLVNTLGETLQDRDLTQLRISETEKYAHVTFFFNGGKEEPFKG--EDRILIQSPKVATYDLQPEMSSTELTDKLVAAIESTEYDVIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVEALEKVGGECLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_PSESM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. tomato GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26
Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            +P+    +   +    GEYL  NG      +ET K+ HVTFF++G R   F    EE + IPS    T+++QP+M A E+ ++   AI  +R+  + VN  N DMVGH+G +EA + A +  D  V  I DA+EKVGG  L+TADHGN E M
Sbjct:  298 IPAPSAFAAGSLKNVLGEYLADNGKTQLRIAETEKYAHVTFFFSGGREEPFPG--EERILIPSPKVATYDLQPEMSAPEVTDKIVDAIEHQRYDVIIVNYANGDMVGHSGIMEAAIKAVEYLDVCVGRITDALEKVGGEALITADHGNVEQM 447          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_VIBF1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.243e-25
Identity = 60/152 (39.47%), Postives = 89/152 (58.55%), Query Frame = 3
Query:   33 SPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSG 488
            +P  ++ T GE+L   G      SET K+ HVTFF+NG     F+    + V  P  +  T+++QP+M A E+ E+   AI S ++  +  N PN DMVGHTG  +A V A ++ DE +  +++AI++V G  L+TADHGNAE M+     G
Sbjct:  307 APASLENTYGEWLSKEGKTQLRISETEKYAHVTFFFNGGIEDEFEGEERQLVASPKVA--TYDLQPEMSAPELTEKLVAAIKSGKYDAIVCNFPNCDMVGHTGVYDAAVKAVESLDECIGKVVEAIKEVDGQLLITADHGNAEMMIDPETGG 456          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Corby) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.243e-25
Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  ++ T GE L  +G+     +ET K+ HVTFF+NG     F +  EE + +PS    T+++QP+M A E+ +    AI SR +H +  N  N+DMVGHTG+ EATV A +  D+ +  +  A++  GG  L+TADHGNAE+M
Sbjct:  306 PVPLNNTLGEVLSSHGLSQLRIAETEKYAHVTFFFNGGCESVFTN--EERIMVPSPQVATYDLQPEMSAPELTKTLIAAINSRDYHVIICNYANADMVGHTGNFEATVQAIECLDQCMHQVWQALKNNGGKLLITADHGNAEEM 447          
The following BLAST results are available for this feature:
BLAST of CX289579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
GPMI_SHESW5.577e-2641.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPC5.577e-2641.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEON5.577e-2640.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBHB7.284e-2638.992,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPA7.284e-2641.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GLUOX7.284e-2642.552,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPA9.514e-2641.552,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSESM9.514e-2641.452,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBF11.243e-2539.472,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPC1.243e-2541.672,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC02014H04SK IF1 Citrus clementina cDNA clone C02014H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289579 ID=CX289579; Name=CX289579; organism=Citrus clementina; type=EST; length=488bp
GGGAGTTGAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGAC
AGAACATCTGGTGAATATTTAGTGCATAATGGTGTCCGGACTTTTGCTTG
CAGTGAGACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACC
GCTCTGGGTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGT
GATTCTGGAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGAT
TGCTGAAAGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGTGC
GTGTTAACCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAG
GCAACAGTGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCAT
TGATGCAATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATG
GCAATGCTGAGGACATGGTCAAGAGGAACAAATCTGGG
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