CX289579

Overview
NameCX289579
Unique NameCX289579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI2_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina acetivorans GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.243e-25
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P E++   GE L   G+     +ET K+ HVTFF NG +   +D   E+   IPS    T++++P+M A E+ +   + I S ++  + +N  N DMVGHTG  EA V A +A D  V  II+A++K GG+ L+TADHGNAE M
Sbjct:  317 PEELENVLGEVLSKQGLVQLRIAETEKYAHVTFFLNGGQEKCYDG--EDRCLIPSPKVATYDLKPEMSAYEVTDEVIRRIQSGKYDVIVLNFANMDMVGHTGIFEAAVQAVEAVDTCVGRIIEALKKAGGVALITADHGNAEQM 458          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus (strain YJ016) GN=gpmI PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.623e-25
Identity = 63/159 (39.62%), Postives = 90/159 (56.60%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSG 488
            +P      P  ++ T GE+L   G      SET K+ HVTFF+NG     F     + V  P  +  T+++QP+M + E+ E+   AI S ++  +  N PN+DMVGHTG  EA   A +A D +V  +++AI++VGG  L+TADHGNAE MV     G
Sbjct:  300 IPLAIAFPPASLENTYGEWLSKQGQTQLRISETEKYAHVTFFFNGGVETEFAGEERQLVASPKVA--TYDLQPEMSSTELTEKMVAAIKSGKYDTIICNYPNADMVGHTGVYEAAEKAIEALDASVGQVVEAIKEVGGQLLITADHGNAEMMVDPETGG 456          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus GN=gpmI PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.623e-25
Identity = 63/159 (39.62%), Postives = 90/159 (56.60%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSG 488
            +P      P  ++ T GE+L   G      SET K+ HVTFF+NG     F     + V  P  +  T+++QP+M + E+ E+   AI S ++  +  N PN+DMVGHTG  EA   A +A D +V  +++AI++VGG  L+TADHGNAE MV     G
Sbjct:  300 IPLAIAFPPASLENTYGEWLSKQGQTQLRISETEKYAHVTFFFNGGVETEFAGEERQLVASPKVA--TYDLQPEMSSTELTEKMVAAIKSGKYDTIICNYPNADMVGHTGVYEAAEKAIEALDASVGQVVEAIKEVGGQLLITADHGNAEMMVDPETGG 456          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_PSEU2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gpmI PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.623e-25
Identity = 62/152 (40.79%), Postives = 88/152 (57.89%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            +P+    +   +    GEYL  NG      +ET K+ HVTFF++G R   F    EE + IPS    T+++QP+M A E+ ++   AI  +R+  + VN  N DMVGH+G +EA + A +  D  V  I +A+EKVGG  L+TADHGN E M
Sbjct:  298 IPAPSAFAAGSLKNVLGEYLADNGKTQLRIAETEKYAHVTFFFSGGREEPFPG--EERILIPSPKVATYDLQPEMSAPEVTDKIVDAIEHQRYDVIVVNYANGDMVGHSGIMEAAIKAVECLDVCVGRIAEALEKVGGEALITADHGNVEQM 447          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_AERS4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Aeromonas salmonicida (strain A449) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.623e-25
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMV 470
            P  +  T GE+L   G      SET K+ HVTFF+NG     F     E V  P  +  T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG  +A V AC+A D  V  + +A+ +VGG  L+TADHGNAE M+
Sbjct:  306 PTALVNTLGEWLAKQGKTQLRISETEKYAHVTFFFNGGEESCFTGEDREIVASPKVA--TYDLQPEMSSEELTDKLVAAIKSGKYDTIICNYPNGDMVGHTGVFDAAVKACEAVDHCVGRVTEALAEVGGECLITADHGNAEKML 448          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Lens) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.119e-25
Identity = 59/144 (40.97%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  ++ T GE L  +G+     +ET K+ HVTFF+NG     F +  EE + +PS    T+++QP+M A E+ +    AI S+ +H +  N  N+DMVGHTG+ EATV A +  D+ ++ +  A++  GG  L+TADHGNAE+M
Sbjct:  306 PVPLNNTLGEVLSSHGLSQLRIAETEKYAHVTFFFNGGCESVFTN--EERIMVPSPQVATYDLQPEMSAHELTKTLIAAINSQDYHVIICNYANADMVGHTGNFEATVQAIECLDQCMQQVWQALKNNGGKLLITADHGNAEEM 447          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.119e-25
Identity = 59/144 (40.97%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  ++ T GE L  +G+     +ET K+ HVTFF+NG     F +  EE + +PS    T+++QP+M A E+ +    AI S+ +H +  N  N+DMVGHTG+ EATV A +  D+ ++ +  A++  GG  L+TADHGNAE+M
Sbjct:  306 PVPLNNTLGEVLSSHGLSQLRIAETEKYAHVTFFFNGGCESVFTN--EERIMVPSPQVATYDLQPEMSAHELTKTLIAAINSQDYHVIICNYANADMVGHTGNFEATVQAIECLDQCMQQVWQALKNNGGKLLITADHGNAEEM 447          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHISS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella sonnei (strain Ss046) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.768e-25
Identity = 61/144 (42.36%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  +  T GE++  N       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M
Sbjct:  310 PASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHIFL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella flexneri GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.768e-25
Identity = 61/144 (42.36%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  +  T GE++  N       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M
Sbjct:  310 PASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHIBS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella boydii serotype 4 (strain Sb227) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.768e-25
Identity = 61/144 (42.36%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  +  T GE++  N       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M
Sbjct:  310 PASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM 451          
The following BLAST results are available for this feature:
BLAST of CX289579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
GPMI2_METAC1.243e-2541.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBVY1.623e-2539.622,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBVU1.623e-2539.622,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEU21.623e-2540.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AERS41.623e-2541.382,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPL2.119e-2540.972,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPH2.119e-2540.972,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHISS2.768e-2542.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIFL2.768e-2542.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIBS2.768e-2542.362,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC02014H04SK IF1 Citrus clementina cDNA clone C02014H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289579 ID=CX289579; Name=CX289579; organism=Citrus clementina; type=EST; length=488bp
GGGAGTTGAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGAC
AGAACATCTGGTGAATATTTAGTGCATAATGGTGTCCGGACTTTTGCTTG
CAGTGAGACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACC
GCTCTGGGTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGT
GATTCTGGAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGAT
TGCTGAAAGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGTGC
GTGTTAACCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAG
GCAACAGTGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCAT
TGATGCAATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATG
GCAATGCTGAGGACATGGTCAAGAGGAACAAATCTGGG
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