CX289579

Overview
NameCX289579
Unique NameCX289579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SALTI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella typhi GN=gpmI PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 60/144 (41.67%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  +  T GE++  N       SET K+ HVTFF+NG     F    EE + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA + A +A D  ++ +  A+E VGG  L+TADHGNAE M
Sbjct:  310 PASLANTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEEPFAG--EERILINSPKVATYDLQPEMSSAELTEKLVAAIESGKYDTIICNYPNGDMVGHTGVMEAAIKAVEALDNCIEQVTKAVESVGGQLLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SALPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella paratyphi A GN=gpmI PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 60/144 (41.67%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  +  T GE++  N       SET K+ HVTFF+NG     F    EE + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA + A +A D  ++ +  A+E VGG  L+TADHGNAE M
Sbjct:  310 PASLANTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEEPFAG--EERILINSPKVATYDLQPEMSSAELTEKLVAAIESGKYDTIICNYPNGDMVGHTGVMEAAIKAVEALDNCIEQVTKAVESVGGQLLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_ENT38 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Enterobacter sp. (strain 638) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 62/155 (40.00%), Postives = 89/155 (57.42%), Query Frame = 3
Query:    3 ELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            ++K+P  Y   P  +  T GE++  +       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +  D  V+ +  A+E VGG  L+TADHGNAE M
Sbjct:  301 DIKVPCAY--PPASLANTLGEWMAKHDKTQLRISETEKYAHVTFFFNGGVEEPFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAITSGKYDTIICNYPNGDMVGHTGVMEAAVKAVETLDHCVEQVAKAVESVGGQLLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_COXBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 62/144 (43.06%), Postives = 86/144 (59.72%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P E+  T GEYL   G R    +ET K+ HVT+F NG +   F  N E+ + IPS    T+++QP+M A+E+  +  + I +  +  +  N  N DMVGHTGD  AT  A +  D+ +K II A++ VGG  L+TADHGNAE M
Sbjct:  315 PLELHNTLGEYLSARGYRQLRIAETEKYAHVTYFLNGGQEAPF--NGEDRLLIPSPKVATYDLQPEMSAVEMTNKLVEIIQNDDYDLIVCNFANPDMVGHTGDETATREAIQVIDDCLKRIITALQSVGGEALITADHGNAEKM 456          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_COXBR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 62/144 (43.06%), Postives = 86/144 (59.72%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P E+  T GEYL   G R    +ET K+ HVT+F NG +   F  N E+ + IPS    T+++QP+M A+E+  +  + I +  +  +  N  N DMVGHTGD  AT  A +  D+ +K II A++ VGG  L+TADHGNAE M
Sbjct:  315 PLELHNTLGEYLSARGYRQLRIAETEKYAHVTYFLNGGQEAPF--NGEDRLLIPSPKVATYDLQPEMSAVEMTNKLVEIIQNDDYDLIVCNFANPDMVGHTGDETATREAIQVIDDCLKRIITALQSVGGEALITADHGNAEKM 456          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_COXBN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 62/144 (43.06%), Postives = 86/144 (59.72%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P E+  T GEYL   G R    +ET K+ HVT+F NG +   F  N E+ + IPS    T+++QP+M A+E+  +  + I +  +  +  N  N DMVGHTGD  AT  A +  D+ +K II A++ VGG  L+TADHGNAE M
Sbjct:  315 PLELHNTLGEYLSARGYRQLRIAETEKYAHVTYFLNGGQEAPF--NGEDRLLIPSPKVATYDLQPEMSAVEMTNKLVEIIQNDDYDLIVCNFANPDMVGHTGDETATREAIQVIDDCLKRIITALQSVGGEALITADHGNAEKM 456          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_CLOD6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium difficile (strain 630) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 62/151 (41.06%), Postives = 88/151 (58.28%), Query Frame = 3
Query:   21 HYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNL-EEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMV 470
            H    P  +  T GEYL  NG      +ET K+ HVTFF+NG   G  + N  EE + IPS    T++++P+M A E+ ++A   +   +F  + +N  N DMVGHTG IEA + A +  D  V  +ID I ++GG  ++TADHGNAE M+
Sbjct:  300 HIAFGPQSLANTLGEYLAKNGKTQLRAAETEKYAHVTFFFNG---GVEEPNKGEERLLIPSPKVATYDLKPEMSAYELTDKALDKLGEDKFDFIVLNFANPDMVGHTGSIEAAIKAVETVDTCVGKLIDKIVELGGSAIITADHGNAEYML 447          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHIDS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 61/144 (42.36%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  +  T GE++  N       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V  +  A+E VGG  L+TADHGNAE M
Sbjct:  310 PASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVDEVAKAVESVGGQLLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SALPB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 60/144 (41.67%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  +  T GE++  N       SET K+ HVTFF+NG     F    EE + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA + A +A D  ++ +  A+E VGG  L+TADHGNAE M
Sbjct:  310 PASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEEPFAG--EERILINSPKVATYDLQPEMSSAELTEKLVAAIESGKYDTIICNYPNGDMVGHTGVMEAAIKAVEALDNCIEQVTKAVESVGGQLLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_PSE14 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 62/152 (40.79%), Postives = 87/152 (57.24%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            +P+    +   +    GEYL  NG      +ET K+ HVTFF++G R   F    EE + IPS    T+++QP+M A E+ ++   AI  +R+  + VN  N DMVGH+G +EA + A +  D  V  I  A+EKVGG  L+TADHGN E M
Sbjct:  298 IPAPSAFAAGSLKNVLGEYLADNGKTQLRIAETEKYAHVTFFFSGGREEPFPG--EERILIPSPKVATYDLQPEMSAPEVTDKIVDAIEHQRYDVIIVNYANGDMVGHSGIMEAAIKAVECLDVCVGRITAALEKVGGEALITADHGNVEQM 447          
The following BLAST results are available for this feature:
BLAST of CX289579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
GPMI_SALTI3.615e-2541.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALPA3.615e-2541.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ENT383.615e-2540.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBU3.615e-2543.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBR3.615e-2543.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBN3.615e-2543.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOD63.615e-2541.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIDS4.722e-2542.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALPB4.722e-2541.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSE144.722e-2540.792,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC02014H04SK IF1 Citrus clementina cDNA clone C02014H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289579 ID=CX289579; Name=CX289579; organism=Citrus clementina; type=EST; length=488bp
GGGAGTTGAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGAC
AGAACATCTGGTGAATATTTAGTGCATAATGGTGTCCGGACTTTTGCTTG
CAGTGAGACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACC
GCTCTGGGTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGT
GATTCTGGAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGAT
TGCTGAAAGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGTGC
GTGTTAACCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAG
GCAACAGTGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCAT
TGATGCAATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATG
GCAATGCTGAGGACATGGTCAAGAGGAACAAATCTGGG
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