CX289579

Overview
NameCX289579
Unique NameCX289579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_GEOTN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 57/145 (39.31%), Postives = 90/145 (62.07%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMV 470
            P  +D T GE L  +G+R    +ET K+ HVTFF +G R   F    E+ + I S    T++++P+M A E+ E   K I + ++  + +N  N DMVGH+G +E T+ A +A DE +  ++DAI + GGI ++TADHGNA++++
Sbjct:  310 PTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREEKFPG--EDRILINSPKVATYDLKPEMSAYEVTEALLKEIAADKYDAIILNYANPDMVGHSGMLEPTIKAVEAVDECLGKVVDAILEKGGIAIITADHGNADEVL 452          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SALCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella choleraesuis GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.167e-25
Identity = 60/144 (41.67%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  +  T GE++  N       SET K+ HVTFF+NG     F    EE + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA + A +A D  +  +  A+E VGG  L+TADHGNAE M
Sbjct:  310 PASLANTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEEPFAG--EERILINSPKVATYDLQPEMSSAELTEKLVAAIESGKYDTIICNYPNGDMVGHTGVMEAAIKAVEALDNCIDQVTKAVESVGGQLLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_CHRSD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.167e-25
Identity = 58/153 (37.91%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   12 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMV 470
            +P+     P ++  T GE +   G++    +ET K+ HVTFF++G R   F+    E +  P D   T++ +P+M A E+ ++   AI +  +  +  N  N DMVGH+G+ +A V A +A D+ +  +I+AIE+ GG  LVTADHGNAE MV
Sbjct:  311 IPAPVAFPPTDLVNTLGETVAKRGLKQLRIAETEKYAHVTFFFSGGREDEFEGEHRELIPSPQDVK-TYDEKPEMSAYELTDKLVAAIDAGTYDLIVCNYANGDMVGHSGNFDAAVKAIEAVDDCLGRVIEAIERAGGECLVTADHGNAEQMV 462          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_SHESH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sediminis (strain HAW-EB3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 58/138 (42.03%), Postives = 83/138 (60.14%), Query Frame = 3
Query:   54 TSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            T GE L  +       SET K+ HVTFF+NG +   F    E+ + I S    T+++QP+M + E+ ++  +AI S ++  +  N PN DMVGHTG  +A V AC+A D  +  ++DA+ KV G  L+TADHGNAE M
Sbjct:  316 TLGEALQDSDKTQLRISETEKYAHVTFFFNGGKEEPFKG--EDRILIQSPKVATYDLQPEMSSAELTDKLVEAIESTKYDVIICNYPNGDMVGHTGSFDAAVKACEAVDTCIGRVVDALAKVDGECLITADHGNAEQM 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_ROSDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 58/150 (38.67%), Postives = 89/150 (59.33%), Query Frame = 3
Query:   39 PEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSG 488
            PEI  T G+++   G+R +  +ET K+ HVTFF NG     FD   E+ +   S    T+++QP+M + E+ + A  A +   +  + VN  N DMVGHTGD++A + AC+A D+ +  ++ A+EK GG  +VTADHGN + M+     G
Sbjct:  305 PEIVNTLGDWVAQQGLRQYRLAETEKYPHVTFFLNGGEEVSFDG--EDRLMPKSPDVATYDLQPEMSSKEVTD-AFVAAIEEGYDLIVVNYANPDMVGHTGDLQAAMKACEAVDQGLGRVLAALEKAGGAMIVTADHGNCDVMIDPETGG 451          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_YERE8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.794e-24
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 467
            P  ++ T GE+L+ +       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTGD +A V A +  D  ++ ++ A++ V G  L+TADHGNAE M
Sbjct:  311 PASLENTFGEWLMKHDKTQLRISETEKYAHVTFFYNGGVEEPFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVGAIASGKYDVIICNYPNGDMVGHTGDYDAAVKAVETLDNCIEQVVAAVQAVDGQLLITADHGNAEQM 452          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_BACLD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.794e-24
Identity = 57/145 (39.31%), Postives = 87/145 (60.00%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMV 470
            P  +D T GE L  NG++    +ET K+ HVTFF +G R   F    EE + I S    T++++P+M A E+ +   K I + + + + +N  N DMVGH+G +E TV A +A DE +  ++DAI   GG  ++TADHGNA+ ++
Sbjct:  310 PVNLDNTVGEVLSQNGLKQLRIAETEKYPHVTFFMSGGREEKFPG--EERILIDSPKVATYDLKPEMSAYEVKDALVKEIEAEKHNAIILNFANPDMVGHSGKVEPTVKAIEAVDECLGEVVDAILAKGGYAIITADHGNADVLI 452          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_VESOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.343e-24
Identity = 62/156 (39.74%), Postives = 93/156 (59.62%), Query Frame = 3
Query:    3 ELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMV 470
            +  LP  Y  S  +++   G+YL + G+     +ET K+ HVTFF NG     F  N EE V IPS    T+++QP+M A E+ +   + I S+++  +  N  N+DMVGH+G ++AT+ A +A D  + II  A+  +GG  L+TADHGNAE M+
Sbjct:  297 DFNLPVAYPSS--KLNNVLGKYLSNLGMTQLRIAETEKYAHVTFFLNGGIEQAF--NGEERVLIPSPDVATYDLQPEMSAFELTDALVENIESQKYDLIICNFANTDMVGHSGKLDATIKAVEAVDTCLGIIYKAMFAIGGEMLITADHGNAEQMI 448          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_RHOBA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodopirellula baltica GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.343e-24
Identity = 60/152 (39.47%), Postives = 85/152 (55.92%), Query Frame = 3
Query:   36 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGI-TFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSG 488
            P ++    GEY+   G+  F C+ET K+ HVTFF+N  R   F+   EE+   PS   + T++ +P+M A +I E+  K I S +   + VN  N DMVGHTG +EA + A +  D  V  ++DA    GG  +VTADHGN E M+     G
Sbjct:  334 PAKMPNILGEYVASKGLHQFRCAETEKYPHVTFFFNDYRDNPFEE--EEWGMAPSPRDVSTYDQKPEMSAEDITEKVLKQIKSGKCDMIIVNYANGDMVGHTGVLEAAIKAVEKVDACVGRVVDATLAAGGSLVVTADHGNCEQMIDPETGG 483          
BLAST of CX289579 vs. ExPASy Swiss-Prot
Match: GPMI_HAHCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Hahella chejuensis (strain KCTC 2396) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.343e-24
Identity = 57/146 (39.04%), Postives = 88/146 (60.27%), Query Frame = 3
Query:   42 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRN 479
            E+  + GEY+          +ET K+ HVTFF++G +   F+   EE + IPS    T++++P+M A E+ ++  +AI S +F  +  N  N DMVGH+G  +A + A +  D+ +K I +A+ +VGG  L+TADHGNAE MV  N
Sbjct:  313 ELTNSIGEYMATLHKTQLRIAETEKYAHVTFFFSGGKEALFEG--EERILIPSPDVATYDLKPEMSAPEVTDKLVEAIKSGKFDLIVCNYANGDMVGHSGVYDAAMKAAECIDQCLKRIAEALNEVGGQCLITADHGNAEQMVDEN 456          
The following BLAST results are available for this feature:
BLAST of CX289579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
GPMI_GEOTN4.722e-2539.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALCH6.167e-2541.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHRSD6.167e-2537.912,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESH1.052e-2442.032,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ROSDO1.052e-2438.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERE81.794e-2439.582,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACLD1.794e-2439.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VESOH2.343e-2439.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOBA2.343e-2439.472,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HAHCH2.343e-2439.042,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC02014H04SK IF1 Citrus clementina cDNA clone C02014H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289579 ID=CX289579; Name=CX289579; organism=Citrus clementina; type=EST; length=488bp
GGGAGTTGAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGAC
AGAACATCTGGTGAATATTTAGTGCATAATGGTGTCCGGACTTTTGCTTG
CAGTGAGACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACC
GCTCTGGGTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGT
GATTCTGGAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGAT
TGCTGAAAGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGTGC
GTGTTAACCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAG
GCAACAGTGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCAT
TGATGCAATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATG
GCAATGCTGAGGACATGGTCAAGAGGAACAAATCTGGG
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