CX289584

Overview
NameCX289584
Unique NameCX289584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PPM1G_MOUSE (Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE=2 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 4.633e-22
Identity = 50/106 (47.17%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   58 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFK 354
            GD  +K+NK L  ++Q+++A PDI  + L DD +F+V+ACDGIW+ MSSQ++VDFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT II+ FK
Sbjct:  398 GDHFYKRNKNLPPQEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 503          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PP2C2_CAEEL (Probable protein phosphatase 2C T23F11.1 OS=Caenorhabditis elegans GN=T23F11.1 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 6.052e-22
Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   58 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPS-TAGGEGCDNMTMIIV 345
            GD  FK      AE+QIVTA PD+ + +L  D +F+VLACDGIWD M++Q++VDF+ E+L  +    ++CE +L RCLAP    GG GCDNMT+++V
Sbjct:  188 GDFAFKNCDTKPAEEQIVTAFPDVITDKLTPDHEFIVLACDGIWDVMTNQEVVDFVREKLAEKRDPQSICEELLTRCLAPDCQMGGLGCDNMTVVLV 284          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PP2C3_SCHPO (Protein phosphatase 2C homolog 3 OS=Schizosaccharomyces pombe GN=ptc3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.300e-21
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   58 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPST-AGGEGCDNMTMIIV 345
            GD EFK N  L  EKQIVTA PD+   E+ DDD+FVVLACDGIWDC +SQQ+++F+   + + + +  + E +++ C+A  T   G GCDNMT+ IV
Sbjct:  191 GDFEFK-NSNLEPEKQIVTALPDVVVHEITDDDEFVVLACDGIWDCKTSQQVIEFVRRGIVAGTSLEKIAENLMDNCIASDTETTGLGCDNMTVCIV 286          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PP2C2_YEAST (Protein phosphatase 2C homolog 2 OS=Saccharomyces cerevisiae GN=PTC2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.691e-21
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   58 GDMEFKQNKFLSAEKQIVTANPDINSVEL-CDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFKK 357
            GD EFK N  L  E+QIVT  PDI    L  D D+FV+LACDGIWDC++SQ  VD +H  L     ++ +  R+++ C AP+T G G GCDNM++++V   K
Sbjct:  193 GDFEFKSNPKLGPEEQIVTCVPDILEHSLDYDRDEFVILACDGIWDCLTSQDCVDLVHLGLREGKTLNEISSRIIDVCCAPTTEGTGIGCDNMSIVVVALLK 294          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PP2C1_CAEEL (Probable protein phosphatase 2C F42G9.1 OS=Caenorhabditis elegans GN=F42G9.1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.141e-20
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   58 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFKK 357
            GD  +K+N+ L  ++Q++TA PD+    L  +D+F+V+ACDGIW+ M SQQ+VDF+ + L   S  + VC+ + + CLA ST G G GCDNMT+I   F +
Sbjct:  388 GDHAYKKNQELGLKEQMITALPDVKIEALTPEDEFIVVACDGIWNSMESQQVVDFVRDLLAKGSSCAEVCDALCDACLADSTDGDGTGCDNMTVICTTFDR 488          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PP2C3_YEAST (Protein phosphatase 2C homolog 3 OS=Saccharomyces cerevisiae GN=PTC3 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.068e-18
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   58 GDMEFKQNKFLSAEKQIVTANPDINSVEL-CDDDDFVVLACDGIWDCMSSQQLVDFIHEQL-HSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFKK 357
            GD EFK N  L   +Q+VT  PDI    L  D+D+FV+LACDGIWDC++SQ+ VD +H  +      +S +  R+++ C +P+T G G GCDNM++ IV   K
Sbjct:  193 GDFEFKSNTKLGPHEQVVTCVPDIICHNLNYDEDEFVILACDGIWDCLTSQECVDLVHYGISQGNMTLSDISSRIVDVCCSPTTEGSGIGCDNMSISIVALLK 295          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PP2C6_PARTE (Probable protein phosphatase 2C 6 OS=Paramecium tetraurelia GN=GSPATT00019634001 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.059e-18
Identity = 38/99 (38.38%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   58 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 354
            GD+E+K++     E+QI+TA PD+   +L   D F+++ CDG+++    QQ+++FI+ +L +   +    E++L++ LA  T+ G GCDNMT I++QFK
Sbjct:  197 GDLEYKKDNRFKPEEQIITALPDVKVTQLSAADKFLLMGCDGVFETWDHQQILNFINSELKNTQNLQKAAEKLLDQLLAKDTSLGTGCDNMTCILIQFK 295          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 5.301e-18
Identity = 39/101 (38.61%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   58 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 360
            GD+ +K NK L  E+Q++T +P+I + +L DD +F+V+ACDG+WD +++Q +VDF+   L++  ++S +CE +L+  +   T      DNM++I+V+F  P
Sbjct:  227 GDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVRLHLNNGVELSVICESLLQEAI---TRDPPSTDNMSVILVRFLHP 324          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PP2C5_PARTE (Probable protein phosphatase 2C 5 OS=Paramecium tetraurelia GN=GSPATT00010582001 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.181e-17
Identity = 37/99 (37.37%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   58 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 354
            GD+E+K++     E+QI++A PD+   +L   D F+++ CDG+++    QQ+++F++++L S   +    E++L++ LA  T+ G GCDNMT I+V FK
Sbjct:  197 GDLEYKKDSRFKPEEQIISALPDVKVTQLTASDKFLLMGCDGVFETWDHQQILNFVNQELKSSQNLQKATEKLLDQLLAKDTSLGTGCDNMTCILVLFK 295          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PP2C4_PARTE (Probable protein phosphatase 2C 4 OS=Paramecium tetraurelia GN=GSPATT00020181001 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.909e-16
Identity = 38/103 (36.89%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   58 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSE----SKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 354
            GD+E+K++  L + +Q++ A PDI  VEL   D F+++ CDG+++ +  Q L+ FI+++L ++      +  V E +L+  +AP T+ G GCDNMT +I+  K
Sbjct:  197 GDLEYKRDSKLRSNEQLIIALPDIKKVELNQTDKFLLMGCDGVFETLDHQDLLKFINQKLGNQQITPQLLGRVAEDLLDNLIAPDTSAGTGCDNMTTLIIYLK 299          
The following BLAST results are available for this feature:
BLAST of CX289584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PPM1G_MOUSE4.633e-2247.17Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE... [more]
PP2C2_CAEEL6.052e-2250.52Probable protein phosphatase 2C T23F11.1 OS=Caenor... [more]
PP2C3_SCHPO2.300e-2150.52Protein phosphatase 2C homolog 3 OS=Schizosaccharo... [more]
PP2C2_YEAST6.691e-2148.04Protein phosphatase 2C homolog 2 OS=Saccharomyces ... [more]
PP2C1_CAEEL1.141e-2045.54Probable protein phosphatase 2C F42G9.1 OS=Caenorh... [more]
PP2C3_YEAST1.068e-1845.63Protein phosphatase 2C homolog 3 OS=Saccharomyces ... [more]
PP2C6_PARTE4.059e-1838.38Probable protein phosphatase 2C 6 OS=Paramecium te... [more]
P2C42_ORYSJ5.301e-1838.61Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]
PP2C5_PARTE1.181e-1737.37Probable protein phosphatase 2C 5 OS=Paramecium te... [more]
PP2C4_PARTE2.909e-1636.89Probable protein phosphatase 2C 4 OS=Paramecium te... [more]

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Properties
Property NameValue
Genbank descriptionC02014H09SK IF1 Citrus clementina cDNA clone C02014H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289584 ID=CX289584; Name=CX289584; organism=Citrus clementina; type=EST; length=475bp
GCACGAGGTACATTTTCTTGTTTAAATGCTTCAGTTTCAGTGTTCTCTTA
ATTTGCAGGTGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAA
AGCAAATTGTTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGAT
GATGATGATTTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTC
AAGCCAGCAATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCA
AGATTTCTGCTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCA
ACAGCAGGAGGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTT
CAAGAAACCAATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGG
AATTCAAATCAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATG
TAGCCGCTGTAATGTACCACTATGT
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