CX289584

Overview
NameCX289584
Unique NameCX289584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PPM1A_HUMAN (Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 37/111 (33.33%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   22 LNASVSVFS*FAGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDD-FVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 351
            +N S++V S   GD ++K        +Q+V+  P+++ +E  ++DD F++LACDGIWD M +++L DF+  +L     +  VC  V++ CL   +      DNM++I++ F
Sbjct:  187 VNGSLAV-SRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF 291          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PPM1A_BOVIN (Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 37/111 (33.33%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   22 LNASVSVFS*FAGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDD-FVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 351
            +N S++V S   GD ++K        +Q+V+  P+++ +E  ++DD F++LACDGIWD M +++L DF+  +L     +  VC  V++ CL   +      DNM++I++ F
Sbjct:  187 VNGSLAV-SRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF 291          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PPM1B_RAT (Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 37/110 (33.64%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   22 LNASVSVFS*FAGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 351
            +N S++V S   GD ++K        +Q+V+  P++  +   ++D+FVVLACDGIWD MS+++L +F++ +L     +  VC  V++ CL   +      DNM++++V F
Sbjct:  192 VNGSLAV-SRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFVVLACDGIWDVMSNEELCEFVNSRLEVSDDLENVCNWVVDTCLHKGSR-----DNMSIVLVCF 295          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PPM1B_MOUSE (Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12
Identity = 37/110 (33.64%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   22 LNASVSVFS*FAGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 351
            +N S++V S   GD ++K        +Q+V+  P++  +   ++D+FVVLACDGIWD MS+++L +F+  +L     +  VC  V++ CL   +      DNM++++V F
Sbjct:  192 VNGSLAV-SRALGDYDYKCVDGKGPTEQLVSPEPEVYEIVRAEEDEFVVLACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCLHKGSR-----DNMSVVLVCF 295          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PPM1B_BOVIN (Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   22 LNASVSVFS*FAGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 351
            +N S++V S   GD ++K        +Q+V+  P++  +   ++D+F++LACDGIWD MS+++L +F+  +L     +  VC  V++ CL   +      DNM++++V F
Sbjct:  192 VNGSLAV-SRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCLHKGSR-----DNMSIVLVCF 295          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: P2C20_ORYSJ (Probable protein phosphatase 2C 20 OS=Oryza sativa subsp. japonica GN=Os02g0600000 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   58 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 354
            GD   K+N+ L  E Q++T NPDI ++++ DD +F+V+A +G+W  M++Q +VD  H++L   ++   +CE +++        G    DN T+I+V FK
Sbjct:  283 GDFACKKNERLPPEDQMLTCNPDILTMDITDDMEFLVIATEGLWCNMTNQNVVDHTHDRLLEGAEARVICEELVQ-------FGLPSGDNTTVILVLFK 374          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: PPM1B_HUMAN (Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 34/110 (30.91%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   22 LNASVSVFS*FAGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 351
            +N S++V S   GD ++K        +Q+V+  P++  +   ++D+F++LACDGIWD MS+++L +++  +L     +  VC  V++ CL   +      DNM++++V F
Sbjct:  192 VNGSLAV-SRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSR-----DNMSIVLVCF 295          
BLAST of CX289584 vs. ExPASy Swiss-Prot
Match: P2C19_ORYSJ (Probable protein phosphatase 2C 19 OS=Oryza sativa subsp. japonica GN=Os02g0599700 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 34/98 (34.69%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   61 DMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 354
            D   K+N+ L  E Q++T NPDI ++++ DD +F+V+A +G+W  M++Q +VD  H++L   ++   +CE +++        G    DN T+I+V FK
Sbjct:  428 DFACKKNERLPPEDQMLTCNPDILTMDITDDMEFLVIATEGLWCNMTNQNVVDHTHDRLLEGAEARVICEELVQ-------FGLPSGDNTTVILVLFK 518          
The following BLAST results are available for this feature:
BLAST of CX289584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PPM1A_HUMAN5.135e-1333.33Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE... [more]
PPM1A_BOVIN5.135e-1333.33Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2... [more]
PPM1B_RAT1.144e-1233.64Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm... [more]
PPM1B_MOUSE1.494e-1233.64Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE... [more]
PPM1B_BOVIN3.328e-1231.82Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2... [more]
P2C20_ORYSJ5.677e-1235.35Probable protein phosphatase 2C 20 OS=Oryza sativa... [more]
PPM1B_HUMAN7.415e-1230.91Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE... [more]
P2C19_ORYSJ2.818e-1134.69Probable protein phosphatase 2C 19 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC02014H09SK IF1 Citrus clementina cDNA clone C02014H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289584 ID=CX289584; Name=CX289584; organism=Citrus clementina; type=EST; length=475bp
GCACGAGGTACATTTTCTTGTTTAAATGCTTCAGTTTCAGTGTTCTCTTA
ATTTGCAGGTGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAA
AGCAAATTGTTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGAT
GATGATGATTTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTC
AAGCCAGCAATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCA
AGATTTCTGCTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCA
ACAGCAGGAGGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTT
CAAGAAACCAATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGG
AATTCAAATCAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATG
TAGCCGCTGTAATGTACCACTATGT
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