CX289587

Overview
NameCX289587
Unique NameCX289587
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB_DICDI (Nascent polypeptide-associated complex subunit beta OS=Dictyostelium discoideum GN=nacB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.401e-21
Identity = 61/129 (47.29%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   52 VEKLMKMAGA-VRTGGKGSVRRKKKAVHKTTTT-DDKRLQSTLKRIGVNAIPAIEEVNIFK-DDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGT 429
            + +L K+A   VRTGGKGS+RRK++  HK+TT+ DDK+L   L  +GV  I A+EE N FK D  +I F NP VQ   A+ T+V+SG  +TK +  I P +I QLG +NL+ ++K+A+ F   A NA T
Sbjct:    5 IARLNKLAEERVRTGGKGSMRRKQQVTHKSTTSVDDKKLHVKLANLGVKPIGAVEEANFFKADGNIIHFKNPSVQT--ASKTFVISGKNETKPMASI-PHVIAQLGAENLNQIKKMADAF-SAAKNANT 129          
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB_SCHPO (Nascent polypeptide-associated complex subunit beta OS=Schizosaccharomyces pombe GN=btf3 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.571e-20
Identity = 54/133 (40.60%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   46 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKT--TTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGA 435
            M+  KL K+    R GGKG+ RRK K   K+  +  DDK++Q  LK++ +  +  I+EVN+FK+D  VI F  P V +S+   T  + G  + K L +ILPGI+N LGP++L  LR++AEQ +      G  A
Sbjct:    1 MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAEQLKVSEGEKGADA 133          
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB_YARLI (Nascent polypeptide-associated complex subunit beta OS=Yarrowia lipolytica GN=EGD1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.774e-17
Identity = 49/127 (38.58%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   34 PSSKMNVEKLMKMAGAVRTGGKGSVRRK-KKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK 408
            P     +  L K +GA ++GGKG+ RR  KK   +  + D+K+L +TLK+     I  I EVN+FK+D  V+ F    V+ S+A+NT+ +SG  Q K + +++P I+ Q+G D L  L++ A QF K
Sbjct:    2 PVDPAKLAALQKKSGA-QSGGKGTPRRPGKKVAGRNISEDEKKLSATLKKFNAQEITGISEVNMFKEDGTVLHFPKVHVEGSVASNTFAISGPSQQKDIAELIPDILPQMGQDALLQLQQAAVQFSK 127          
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB1_YEAST (Nascent polypeptide-associated complex subunit beta-1 OS=Saccharomyces cerevisiae GN=EGD1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.165e-15
Identity = 51/136 (37.50%), Postives = 68/136 (50.00%), Query Frame = 1
Query:   34 PSSKMNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAA--NTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGA 435
            P  +  + KL K++   + GG      KK         DD +LQS L ++    I  + E N FKDD  +   N KV   +AA  NT V  G PQ K LQD+ PGII+QLGP+ +  L +LA Q +K    A   A
Sbjct:    2 PIDQEKLAKLQKLSANNKVGGTRRKLNKKAGSSAGANKDDTKLQSQLAKLHAVTIDNVAEANFFKDDGKVMHFN-KVGVQVAAQHNTSVFYGLPQEKNLQDLFPGIISQLGPEAIQALSQLAAQMEKHEAKAPADA 136          
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB1_YEAS7 (Nascent polypeptide-associated complex subunit beta-1 OS=Saccharomyces cerevisiae (strain YJM789) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.165e-15
Identity = 51/136 (37.50%), Postives = 68/136 (50.00%), Query Frame = 1
Query:   34 PSSKMNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAA--NTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGA 435
            P  +  + KL K++   + GG      KK         DD +LQS L ++    I  + E N FKDD  +   N KV   +AA  NT V  G PQ K LQD+ PGII+QLGP+ +  L +LA Q +K    A   A
Sbjct:    2 PIDQEKLAKLQKLSANNKVGGTRRKLNKKAGSSAGANKDDTKLQSQLAKLHAVTIDNVAEANFFKDDGKVMHFN-KVGVQVAAQHNTSVFYGLPQEKNLQDLFPGIISQLGPEAIQALSQLAAQMEKHEAKAPADA 136          
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB_LODEL (Nascent polypeptide-associated complex subunit beta OS=Lodderomyces elongisporus GN=EGD1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.554e-15
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   55 EKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 405
            EKL K+  +      GS  + KK V   T  DD +L  TL ++    I  +EE N FKDD  V+ F    VQ + AANT+  +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q
Sbjct:    6 EKLAKLQKSTAKKVGGSRVKAKKGVK--TEQDDTKLIETLGKLKATKIEGVEEANFFKDDGKVLHFNRVGVQGAPAANTFAFTGYPQEKNITQLIPQILPQLGAENLEILRQLAEQIQ 121          
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB_ASHGO (Nascent polypeptide-associated complex subunit beta OS=Ashbya gossypii GN=EGD1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.288e-14
Identity = 53/138 (38.41%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   34 PSSKMNVEKLMKMAGAVRTGGKGSVRRK--KKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAP 438
            P  +  + KL K++   + GG    RRK  KK+   +   DD +LQ+ L ++    +  +EE N FKDD  V+ F    VQ +   NT V  G PQ K LQD+ P II QLG +++D L +LA Q Q    NA   AP
Sbjct:    2 PIDQEKLAKLQKLSANNKVGG---TRRKLAKKSGTASANKDDSKLQAQLAKLKAVTMDQVEEANFFKDDGSVLHFNKVGVQVAPQHNTSVFYGIPQEKSLQDLFPSIIPQLGSESIDALTQLATQLQ----NAQAAAP 132          
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB_PICST (Nascent polypeptide-associated complex subunit beta OS=Pichia stipitis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.395e-14
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   55 EKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ--KQAPNAGTGAP 438
            EKL K+  A      GS  + KK V   T  DD +L   L ++    I  +EE N F++D  V+ F    VQ + A+NT+  +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  K       GAP
Sbjct:    6 EKLAKLQKAAAKKVGGSRVKAKKVVK--TEQDDTKLIEALGKLKATKIENVEEANFFREDGKVLHFNRVGVQGAAASNTFAFTGYPQEKNVTQLIPQILPQLGAENLEILRQLAEQLQAGKAPTELNAGAP 134          
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB_DEBHA (Nascent polypeptide-associated complex subunit beta OS=Debaryomyces hansenii GN=EGD1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-13
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 1
Query:   34 PSSKMNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 405
            P     + KL K + A + GG     R K   +  T  DD +L   L ++    I  IEE N FK+D  V+ F    VQ +   NT+ ++G PQ K +  ++P I+ QLG +NL+ LRKLAEQ Q
Sbjct:    2 PVDPEKLAKLQKASVAKKVGGS----RVKAKKNVKTEQDDTKLIEALGKLKAQKIEGIEEANFFKEDGKVLHFNRVGVQGAAQHNTFALTGYPQEKDVTQLIPQILPQLGAENLEILRKLAEQIQ 122          
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB_CANGA (Nascent polypeptide-associated complex subunit beta OS=Candida glabrata GN=EGD1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-13
Identity = 46/134 (34.33%), Postives = 65/134 (48.51%), Query Frame = 1
Query:   34 PSSKMNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTG 432
            P  +  + KL KM+   + GG    + KK         DD +L + L ++    I  + E N FKDD  V+ F    VQ +   NT V  G  Q K LQ++ PGII+QLG + +  L +LA Q +K   N   G
Sbjct:    2 PIDQEKLAKLQKMSAGNKVGGTRRKQAKKTGSGSAGNKDDTKLHNQLAKLHAVTIDNVAEANFFKDDGKVLHFNKVGVQVAPQHNTSVFYGMAQEKNLQELFPGIISQLGGEAIQALSQLAAQMEKAQANENAG 135          
The following BLAST results are available for this feature:
BLAST of CX289587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_DICDI5.401e-2147.29Nascent polypeptide-associated complex subunit bet... [more]
NACB_SCHPO1.571e-2040.60Nascent polypeptide-associated complex subunit bet... [more]
NACB_YARLI2.774e-1738.58Nascent polypeptide-associated complex subunit bet... [more]
NACB1_YEAST1.165e-1537.50Nascent polypeptide-associated complex subunit bet... [more]
NACB1_YEAS71.165e-1537.50Nascent polypeptide-associated complex subunit bet... [more]
NACB_LODEL7.554e-1541.53Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASHGO1.288e-1438.41Nascent polypeptide-associated complex subunit bet... [more]
NACB_PICST6.395e-1438.17Nascent polypeptide-associated complex subunit bet... [more]
NACB_DEBHA1.425e-1337.60Nascent polypeptide-associated complex subunit bet... [more]
NACB_CANGA1.425e-1334.33Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionC02014H12SK IF1 Citrus clementina cDNA clone C02014H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289587 ID=CX289587; Name=CX289587; organism=Citrus clementina; type=EST; length=443bp
TCTTCACCAAATTCTTTGTCCCCACACAAAAACCCTAGCTCCAAGATGAA
TGTGGAGAAGCTAATGAAGATGGCCGGTGCAGTTCGCACTGGTGGTAAGG
GTAGTGTGAGAAGAAAGAAGAAGGCTGTTCATAAGACAACAACCACCGAT
GACAAGAGGCTTCAGAGCACCTTGAAGAGAATAGGAGTGAATGCTATTCC
TGCAATTGAGGAAGTTAACATTTTCAAGGATGACGTCGTTATTCAGTTCT
TAAATCCCAAAGTACAAGCTTCAATTGCTGCCAACACATGGGTAGTTAGT
GGTGCCCCACAAACCAAGAAGTTGCAGGATATTCTCCCTGGAATTATCAA
TCAATTGGGGCCAGATAATTTGGACAACCTGAGGAAGTTGGCGGAGCAGT
TTCAGAAGCAAGCACCTAATGCAGGAACTGGTGCACCCACGAC
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