CX289587

Overview
NameCX289587
Unique NameCX289587
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB_KLULA (Nascent polypeptide-associated complex subunit beta OS=Kluyveromyces lactis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.174e-13
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 1
Query:   34 PSSKMNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAP 438
            P  +  + KL K++   + GG    RRK      +++ DD +LQ  L+++    +  +++ N FKDD  V+ F    VQ +   NT V  G PQ K LQ++ P II Q+G D ++ L ++A Q Q  Q  N    AP
Sbjct:    2 PIDQEKLAKLQKLSANNKVGG---TRRKFAKKSGSSSKDDSKLQDQLQKLRAVTVDNVQQANFFKDDGTVLHFNKVGVQVAPQHNTSVFYGIPQEKSLQELFPDIIPQMGADAINALTQMASQLQSAQGANQQAAAP 135          
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB_CANAL (Nascent polypeptide-associated complex subunit beta OS=Candida albicans GN=EGD1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.206e-12
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query:   55 EKLMKM--AGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 405
            EKL K+  + A + GG     R K   +  T  DD +L   L ++    I  +EE N F++D  V+ F    VQ + A+NT+  +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q
Sbjct:    6 EKLAKLQKSSAKKVGGS----RVKAKKNIKTEQDDTKLIEALGKLKATKIEGVEEANFFREDGKVLHFNRVGVQGAPASNTFAFTGYPQEKNITQLIPQILPQLGAENLEILRQLAEQIQ 121          
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: NACB_PICGU (Nascent polypeptide-associated complex subunit beta OS=Pichia guilliermondii GN=EGD1 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.985e-12
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 1
Query:   55 EKLMKMA-GAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAG 426
            EKL K+  GA +  G   V+ KK    +    DD +L   L ++    + A+EE N FK+D  V+ F    VQ++   N    +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  + P+ G
Sbjct:    6 EKLAKLQQGAAKKVGGQRVKAKKVKSEQ----DDTKLMEALGKLKATKVNAVEEANFFKEDGKVLHFKRVGVQSAAQHNVCAFTGYPQEKDVTQLIPQILPQLGAENLEILRQLAEQIQAGKTPSMG 128          
The following BLAST results are available for this feature:
BLAST of CX289587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_KLULA3.174e-1333.58Nascent polypeptide-associated complex subunit bet... [more]
NACB_CANAL1.206e-1237.50Nascent polypeptide-associated complex subunit bet... [more]
NACB_PICGU5.985e-1236.22Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionC02014H12SK IF1 Citrus clementina cDNA clone C02014H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289587 ID=CX289587; Name=CX289587; organism=Citrus clementina; type=EST; length=443bp
TCTTCACCAAATTCTTTGTCCCCACACAAAAACCCTAGCTCCAAGATGAA
TGTGGAGAAGCTAATGAAGATGGCCGGTGCAGTTCGCACTGGTGGTAAGG
GTAGTGTGAGAAGAAAGAAGAAGGCTGTTCATAAGACAACAACCACCGAT
GACAAGAGGCTTCAGAGCACCTTGAAGAGAATAGGAGTGAATGCTATTCC
TGCAATTGAGGAAGTTAACATTTTCAAGGATGACGTCGTTATTCAGTTCT
TAAATCCCAAAGTACAAGCTTCAATTGCTGCCAACACATGGGTAGTTAGT
GGTGCCCCACAAACCAAGAAGTTGCAGGATATTCTCCCTGGAATTATCAA
TCAATTGGGGCCAGATAATTTGGACAACCTGAGGAAGTTGGCGGAGCAGT
TTCAGAAGCAAGCACCTAATGCAGGAACTGGTGCACCCACGAC
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