CX289588

Overview
NameCX289588
Unique NameCX289588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: THS4_VITVI (Stilbene synthase 4 OS=Vitis vinifera GN=GSVIVT00005194001 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.394e-35
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDP-VPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDG+ A+IVGSDP +  ERPLF+L +A Q F+PN+   I G L E G++F L   +P +I +NIE    K    IG   +D+N +FW  HPGGPAIL+ +E
Sbjct:  213 ALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENIENCLTKAFDPIGI--SDWNSLFWIAHPGGPAILDAVE 314

HSP 2 Score: 67.781 bits (164), Expect = 2.394e-35
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +RVMLY  GC  G + LR AKD+AENN G+RVL+  SE T++ F+ PS +    LVG
Sbjct:  149 GLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS1_CAMSI (Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.394e-35
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  E+PLFEL +A Q  LP+++  IDG L E G++F L +++P +I  NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAIIVGSDPIPEVEKPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLAEAFQPLGI--SDWNSLFWIAHPGGPAILDQVE 314

HSP 2 Score: 62.3882 bits (150), Expect = 2.394e-35
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS2_CAMSI (Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.061e-35
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  E+PLFEL +A Q  LP+++  IDG L E G++F L +++P +I  NIE    +    +  T  D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAIIVGSDPIPEVEKPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLNEAFQPLNIT--DWNSLFWIAHPGGPAILDQVE 314

HSP 2 Score: 62.3882 bits (150), Expect = 4.061e-35
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDAHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_PERFR (Chalcone synthase OS=Perilla frutescens GN=CHS PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.290e-35
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDPV   ERPLF+L +A Q  LP+++  IDG L E G++F L +++P +I  NIE    +  G +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGSDPVVGVERPLFQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPLGI--SDWNSVFWIAHPGGPAILDQVE 314

HSP 2 Score: 62.3882 bits (150), Expect = 5.290e-35
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPSVKRFMMYQQGCFAGGTVLRMAKDLAENNAGARVLVVCSEITAVTFRGPSESHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS5_SOYBN (Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.290e-35
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P E+PLF+L    Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G   +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGSDPLPVEKPLFQLVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALVEAFQPLGI--SDYNSIFWIAHPGGPAILDQVE 313

HSP 2 Score: 60.4622 bits (145), Expect = 5.290e-35
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ P+      LVG
Sbjct:  149 GLRPSVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS1_SOYBN (Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.290e-35
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P E+PLF+L    Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G   +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGSDPLPVEKPLFQLVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALVEAFQPLGI--SDYNSIFWIAHPGGPAILDQVE 313

HSP 2 Score: 60.4622 bits (145), Expect = 5.290e-35
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ P+      LVG
Sbjct:  149 GLRPSVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS2_SOLTU (Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.891e-35
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA AMI+GSDP+P  ERPLFEL +A Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAMIIGSDPLPEVERPLFELVSAAQTLLPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLIEAFQPLGI--SDWNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 60.077 bits (144), Expect = 6.891e-35
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + +R+AKD+AENN G+RVL+  SE T + F  PS      +VG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFSGPSDTHLDSMVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS3_SOYBN (Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.891e-35
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P E+PLF+L    Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G   +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGSDPLPVEKPLFQLVWTAQTILPDSEGAIDGHLGEVGLTFHLLKDVPGLISKNIEKALVEAFQPLGI--SDYNSIFWIAHPGGPAILDQVE 313

HSP 2 Score: 60.4622 bits (145), Expect = 6.891e-35
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ P+      LVG
Sbjct:  149 GLRPSVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_HYPAN (Chalcone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.891e-35
Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+I+GSDP+P  E+PLFEL +A Q  LP++E  IDG L E G++F L +++P +I  N+E    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAIIIGSDPIPEVEKPLFELVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNVEKSLTEAFKPLGI--SDWNSLFWIAHPGGPAILDQVE 314

HSP 2 Score: 61.2326 bits (147), Expect = 6.891e-35
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ P+      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.972e-35
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP  S ERPLF+L +A Q  LP+++  IDG L E G++F L +++P +I  NIE    +  G IG   +D+N +FW  HPGGPAIL+++E
Sbjct:  217 ALFGDGAAAVIVGSDPDLSVERPLFQLISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGI--SDWNSLFWIAHPGGPAILDQVE 318

HSP 2 Score: 62.003 bits (149), Expect = 8.972e-35
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  153 GLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNTGARVLVVCSEITAVTFRGPSDSHLDSLVG 215
The following BLAST results are available for this feature:
BLAST of CX289588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS4_VITVI2.394e-3550.00Stilbene synthase 4 OS=Vitis vinifera GN=GSVIVT000... [more]
CHS1_CAMSI2.394e-3550.00Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 P... [more]
CHS2_CAMSI4.061e-3550.00Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 P... [more]
CHSY_PERFR5.290e-3550.96Chalcone synthase OS=Perilla frutescens GN=CHS PE=... [more]
CHS5_SOYBN5.290e-3550.49Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV... [more]
CHS1_SOYBN5.290e-3550.49Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV... [more]
CHS2_SOLTU6.891e-3551.92Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 P... [more]
CHS3_SOYBN6.891e-3550.49Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV... [more]
CHSY_HYPAN6.891e-3549.04Chalcone synthase OS=Hypericum androsaemum PE=1 SV... [more]
CHS2_DAUCA8.972e-3551.92Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC02015A01SK IF1 Citrus clementina cDNA clone C02015A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289588 ID=CX289588; Name=CX289588; organism=Citrus clementina; type=EST; length=517bp
AATTCGGCACGAGGGGACTCAGTCCTGAGACTCAGCGTGTCATGCTCTAC
TTCATGGGCTGCTCTGGTGGAGTTTCTGGCCTGCGTGTGGCGAAGGACAT
TGCTGAAAACAATCCTGGAAGCAGAGTTCTGCTAGCTACTTCCGAAACTA
CAATTATTGGGTTCAAGCCACCAAGTGCAGAAAGGCCATATGACTTGGTT
GGCAGTCGCACTCTTTGGTGATGGTGCTGGAGCCATGATCGTGGGCTCAG
ACCCGGTTCCCAGTGAAAGGCCTCTCTTTGAGCTGCACACAGCAATCCAG
AACTTCTTGCCAAATACCGAAAAAACAATAGACGGGAGGCTTACGGAAGA
GGGGATTAGCTTTAAGCTGGCAAGAGAGCTGCCTCAGATAATCGAGGATA
ACATTGAAGGATTCTGTGGCAAGCTAATGGGCAATATTGGATTTACCAAC
AATGATTACAACAAGATGTTTTGGGCAGGTCATCCCGGAGGGCCTGCGAT
ATTGAATAAGTTGGAAA
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