CX289588

Overview
NameCX289588
Unique NameCX289588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: VPS_HUMLU (Phloroisovalerophenone synthase OS=Humulus lupulus GN=VPS PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.169e-34
Identity = 52/105 (49.52%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS--ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            +LFGDGA ++IVG+DP  S  ERP+FEL +A Q  LPN++  I G +TE G++F L R++P +I  NIE    +    IG   ND+N +FW  HPGGPAIL+++E
Sbjct:  215 SLFGDGASSVIVGADPDASVGERPIFELVSAAQTILPNSDGAIAGHVTEAGLTFHLLRDVPGLISQNIEKSLIEAFTPIGI--NDWNNIFWIAHPGGPAILDEIE 317

HSP 2 Score: 64.3142 bits (155), Expect = 1.169e-34
Identity = 34/63 (53.97%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +RVMLY +GC  G   LR+AKDIAENN G+RVL+  SE T   F+ PS +    LVG
Sbjct:  151 GLRPSVKRVMLYQLGCYAGGKVLRIAKDIAENNKGARVLIVCSEITACIFRGPSEKHLDCLVG 213
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSB_PEA (Chalcone synthase 1B OS=Pisum sativum GN=CHS-1B PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.169e-34
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  E+PLFEL    Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G   +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGSDPLPQVEKPLFELVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALVEAFQPLGI--SDYNSLFWIAHPGGPAILDQVE 314

HSP 2 Score: 61.6178 bits (148), Expect = 1.169e-34
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPHVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.522e-34
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP    ERPLF+L +A Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G T  DYN +FW  HPGGPAIL+++E
Sbjct:  217 ALFGDGAAAVIVGADPDERVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGIT--DYNSIFWVAHPGGPAILDQVE 318

HSP 2 Score: 63.1586 bits (152), Expect = 1.522e-34
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LRVAKD+AENN G+RVL+  SE T + F+ PS      +VG
Sbjct:  153 GLRPSVKRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVG 215
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS3_CAMSI (Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.523e-34
Identity = 49/104 (47.12%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            +LFGDGA A+I+GSDP+P  E+PLFEL +A Q  LP+++  IDG L E G++F L +++P++I  N+E    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 SLFGDGAAAIIIGSDPIPEVEKPLFELVSAAQTILPSSDGAIDGHLREVGLTFHLLKDVPRLISMNVEKSLVEAFQPLGI--SDWNSLFWIAHPGGPAILDQVE 314

HSP 2 Score: 62.3882 bits (150), Expect = 1.523e-34
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS6_SORBI (Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.982e-34
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP    ERPLF+L +A Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G T  DYN +FW  HPGGPAIL+++E
Sbjct:  217 ALFGDGAAAVIVGADPDERVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGIT--DYNSIFWVAHPGGPAILDQVE 318

HSP 2 Score: 62.7734 bits (151), Expect = 1.982e-34
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P   R+M+Y  GC  G + LRVAKD+AENN G+RVL+  SE T + F+ PS      +VG
Sbjct:  153 GLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVG 215
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS5_SORBI (Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.982e-34
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP    ERPLF+L +A Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G T  DYN +FW  HPGGPAIL+++E
Sbjct:  217 ALFGDGAAAVIVGADPDERVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGIT--DYNSIFWVAHPGGPAILDQVE 318

HSP 2 Score: 62.7734 bits (151), Expect = 1.982e-34
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P   R+M+Y  GC  G + LRVAKD+AENN G+RVL+  SE T + F+ PS      +VG
Sbjct:  153 GLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVG 215
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS3_SORBI (Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.982e-34
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP    ERPLF+L +A Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G T  DYN +FW  HPGGPAIL+++E
Sbjct:  217 ALFGDGAAAVIVGADPDERVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGIT--DYNSIFWVAHPGGPAILDQVE 318

HSP 2 Score: 62.7734 bits (151), Expect = 1.982e-34
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P   R+M+Y  GC  G + LRVAKD+AENN G+RVL+  SE T + F+ PS      +VG
Sbjct:  153 GLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVG 215
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS2_SORBI (Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.982e-34
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP    ERPLF+L +A Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G T  DYN +FW  HPGGPAIL+++E
Sbjct:  217 ALFGDGAAAVIVGADPDERVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGIT--DYNSIFWVAHPGGPAILDQVE 318

HSP 2 Score: 62.7734 bits (151), Expect = 1.982e-34
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P   R+M+Y  GC  G + LRVAKD+AENN G+RVL+  SE T + F+ PS      +VG
Sbjct:  153 GLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVG 215
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS1_SORBI (Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.982e-34
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP    ERPLF+L +A Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G T  DYN +FW  HPGGPAIL+++E
Sbjct:  217 ALFGDGAAAVIVGADPDERVERPLFQLVSASQRILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALEEAFKPLGIT--DYNSIFWVAHPGGPAILDQVE 318

HSP 2 Score: 62.7734 bits (151), Expect = 1.982e-34
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P   R+M+Y  GC  G + LRVAKD+AENN G+RVL+  SE T + F+ PS      +VG
Sbjct:  153 GLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVG 215
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS1_GERHY (Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.983e-34
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDP-VPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP + +ERPLFE+ +A Q  LP++E  IDG L E G++F L +++P +I  NIE         +G   ND+N +FW  HPGGPAIL+++E
Sbjct:  216 ALFGDGAAAVIVGSDPDLTTERPLFEMVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALTTAFSPLGI--NDWNSIFWIAHPGGPAILDQVE 317

HSP 2 Score: 60.4622 bits (145), Expect = 1.983e-34
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ P+      LVG
Sbjct:  152 GLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPNDTHLDSLVG 214
The following BLAST results are available for this feature:
BLAST of CX289588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
VPS_HUMLU1.169e-3449.52Phloroisovalerophenone synthase OS=Humulus lupulus... [more]
CHSB_PEA1.169e-3450.96Chalcone synthase 1B OS=Pisum sativum GN=CHS-1B PE... [more]
CHS4_SORBI1.522e-3450.96Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
CHS3_CAMSI1.523e-3447.12Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 P... [more]
CHS6_SORBI1.982e-3450.96Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=... [more]
CHS5_SORBI1.982e-3450.96Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=... [more]
CHS3_SORBI1.982e-3450.96Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=... [more]
CHS2_SORBI1.982e-3450.96Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=... [more]
CHS1_SORBI1.982e-3450.96Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=... [more]
CHS1_GERHY1.983e-3450.96Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02015A01SK IF1 Citrus clementina cDNA clone C02015A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289588 ID=CX289588; Name=CX289588; organism=Citrus clementina; type=EST; length=517bp
AATTCGGCACGAGGGGACTCAGTCCTGAGACTCAGCGTGTCATGCTCTAC
TTCATGGGCTGCTCTGGTGGAGTTTCTGGCCTGCGTGTGGCGAAGGACAT
TGCTGAAAACAATCCTGGAAGCAGAGTTCTGCTAGCTACTTCCGAAACTA
CAATTATTGGGTTCAAGCCACCAAGTGCAGAAAGGCCATATGACTTGGTT
GGCAGTCGCACTCTTTGGTGATGGTGCTGGAGCCATGATCGTGGGCTCAG
ACCCGGTTCCCAGTGAAAGGCCTCTCTTTGAGCTGCACACAGCAATCCAG
AACTTCTTGCCAAATACCGAAAAAACAATAGACGGGAGGCTTACGGAAGA
GGGGATTAGCTTTAAGCTGGCAAGAGAGCTGCCTCAGATAATCGAGGATA
ACATTGAAGGATTCTGTGGCAAGCTAATGGGCAATATTGGATTTACCAAC
AATGATTACAACAAGATGTTTTGGGCAGGTCATCCCGGAGGGCCTGCGAT
ATTGAATAAGTTGGAAA
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