CX289588

Overview
NameCX289588
Unique NameCX289588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.983e-34
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+I+GSDP  S ERPLF+L +A Q  LP+++  IDG L E G++F L +++P +I  NIE    +  G IG   +D+N +FW  HPGGPAIL+++E
Sbjct:  218 ALFGDGAAAVILGSDPDLSVERPLFQLISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGI--SDWNSLFWIAHPGGPAILDQVE 319

HSP 2 Score: 62.003 bits (149), Expect = 1.983e-34
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  154 GLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGARVLVVCSEITAVTFRGPSDSHLDSLVG 216
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: THS2_VITVI (Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT00004047001 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.983e-34
Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDP-VPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDG+ A+IVGSDP +  ERPLF+L +A Q F+PN+   I G L E G++F L   +P +I +NIE    +    +G   +D+N +FW  HPGGPAIL+ +E
Sbjct:  213 ALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENIEKCLTQAFDPLGI--SDWNSLFWIAHPGGPAILDAVE 314

HSP 2 Score: 67.781 bits (164), Expect = 1.983e-34
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +RVMLY  GC  G + LR AKD+AENN G+RVL+  SE T++ F+ PS +    LVG
Sbjct:  149 GLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.583e-34
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP  S ERPLFEL +A Q  LP+++  IDG L E G++F L +++P II  NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGADPDTSVERPLFELISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLAEAFAPLGI--SDWNSLFWIAHPGGPAILDQVE 314

HSP 2 Score: 61.2326 bits (147), Expect = 2.583e-34
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ P+      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.363e-34
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDP-VPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP + +ERPLFE+ +A Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G T  D+N +FW  HPGGPAIL+++E
Sbjct:  216 ALFGDGAAAVIVGADPDLTTERPLFEMISAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALTQAFSPLGIT--DWNSIFWIAHPGGPAILDQVE 317

HSP 2 Score: 60.4622 bits (145), Expect = 3.363e-34
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ P+      LVG
Sbjct:  152 GLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPNDTHLDSLVG 214
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.363e-34
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP  + ERPLF++ +A Q  LP++E  IDG L E G++F L +++P +I  NIE   G     +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  216 ALFGDGAAAVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGI--SDWNSIFWVAHPGGPAILDQVE 317

HSP 2 Score: 62.003 bits (149), Expect = 3.363e-34
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P   R+M+Y  GC  G + LRVAKD+AENN G+RVL   SE T + F+ PS      +VG
Sbjct:  152 GLRPNVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLAVCSEITAVTFRGPSESHLDSMVG 214
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.363e-34
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP  + ERPLF++ +A Q  LP++E  IDG L E G++F L +++P +I  NIE   G     +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  216 ALFGDGAAAVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGI--SDWNSIFWVAHPGGPAILDQVE 317

HSP 2 Score: 62.003 bits (149), Expect = 3.363e-34
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P   R+M+Y  GC  G + LRVAKD+AENN G+RVL   SE T + F+ PS      +VG
Sbjct:  152 GLRPNVSRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLAVCSEITAVTFRGPSESHLDSMVG 214
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS2_SOLLC (Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS2 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 3.364e-34
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGD A AMI+GSDP+P  ERPLFEL +A Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDRAAAMIIGSDPLPEVERPLFELVSAAQTLLPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLIEAFQPLGI--SDWNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 60.8474 bits (146), Expect = 3.364e-34
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + +R+AKD+AENN G+RVL+  SE T + F+ PS      +VG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSMVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_ONOVI (Chalcone synthase OS=Onobrychis viciifolia GN=CHS PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.364e-34
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  E+PLFEL    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +G   +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPIPEIEKPLFELIWTAQTIAPDSEGAIDGHLREVGLTFHLLKDVPGIVSKNIDKALVEAFQPLGI--SDYNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 62.003 bits (149), Expect = 3.364e-34
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPHVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_PINSY (Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.381e-34
Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DPVP  E+P FEL    Q  LP+++  IDG L E G++F L +++P +I  NIE    +     G   +D+N++FW  HPGGPAIL+++E
Sbjct:  218 ALFGDGAAALIVGADPVPEVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGI--SDWNQLFWIAHPGGPAILDQVE 319

HSP 2 Score: 63.5438 bits (153), Expect = 4.381e-34
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +RVM+Y  GC  G + LRVAKD+AENN G+RVL+  SE T + F+ PS      +VG
Sbjct:  154 GLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVG 216
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS1_PEA (Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.382e-34
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDPVP  E+P+FE+    Q   P++E  IDG L E+G++F L +++P I+  NI+    +    +G   +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREQGLTFHLLKDVPGIVSKNIDKALVEAFKPLGI--SDYNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 61.2326 bits (147), Expect = 4.382e-34
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211
The following BLAST results are available for this feature:
BLAST of CX289588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSY_PETCR1.983e-3450.96Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
THS2_VITVI1.983e-3448.08Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT000... [more]
CHSY_BETVE2.583e-3450.96Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHSY_CALCH3.363e-3450.00Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]
CHSY_ORYSJ3.363e-3450.00Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI3.363e-3450.00Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHS2_SOLLC3.364e-3450.96Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS... [more]
CHSY_ONOVI3.364e-3449.04Chalcone synthase OS=Onobrychis viciifolia GN=CHS ... [more]
CHSY_PINSY4.381e-3448.08Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 ... [more]
CHS1_PEA4.382e-3448.08Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC02015A01SK IF1 Citrus clementina cDNA clone C02015A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289588 ID=CX289588; Name=CX289588; organism=Citrus clementina; type=EST; length=517bp
AATTCGGCACGAGGGGACTCAGTCCTGAGACTCAGCGTGTCATGCTCTAC
TTCATGGGCTGCTCTGGTGGAGTTTCTGGCCTGCGTGTGGCGAAGGACAT
TGCTGAAAACAATCCTGGAAGCAGAGTTCTGCTAGCTACTTCCGAAACTA
CAATTATTGGGTTCAAGCCACCAAGTGCAGAAAGGCCATATGACTTGGTT
GGCAGTCGCACTCTTTGGTGATGGTGCTGGAGCCATGATCGTGGGCTCAG
ACCCGGTTCCCAGTGAAAGGCCTCTCTTTGAGCTGCACACAGCAATCCAG
AACTTCTTGCCAAATACCGAAAAAACAATAGACGGGAGGCTTACGGAAGA
GGGGATTAGCTTTAAGCTGGCAAGAGAGCTGCCTCAGATAATCGAGGATA
ACATTGAAGGATTCTGTGGCAAGCTAATGGGCAATATTGGATTTACCAAC
AATGATTACAACAAGATGTTTTGGGCAGGTCATCCCGGAGGGCCTGCGAT
ATTGAATAAGTTGGAAA
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