CX289588

Overview
NameCX289588
Unique NameCX289588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS7_PICMA (Chalcone synthase 7 OS=Picea mariana GN=CSF7 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.706e-34
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP+P  E+P FEL    Q  LP+++  IDG L E G++F L +++P +I  NIE    +     G   +D+N++FW  HPGGPAIL+++E
Sbjct:  218 ALFGDGAAALIVGADPIPQVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGI--SDWNQLFWIAHPGGPAILDQVE 319          

HSP 2 Score: 63.5438 bits (153), Expect = 5.706e-34
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +RVM+Y  GC  G + LRVAKD+AENN G+RVL+  SE T + F+ PS      +VG
Sbjct:  154 GLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVG 216          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSB_SOLTU (Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.708e-34
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+I+GSDP+   ERPLFEL +A Q  +P++E  IDG L E G++F L +++P +I  NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAIIMGSDPIIGVERPLFELVSAAQTLVPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGI--SDWNSLFWIAHPGGPAILDQVE 314          

HSP 2 Score: 63.1586 bits (152), Expect = 5.708e-34
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSESHLDSLVG 211          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.430e-34
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 1
Query:  181 KGHMTWLA-VALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            +GH+  L   ALFGDGA A+I+GSDP  S ERPLFE+ +A Q  LP++E  IDG L E G++F L +++P +I  NIE    +    +    ND+N +FW  HPGGPAIL+++E
Sbjct:  209 EGHLDSLVGQALFGDGAAAVIIGSDPDLSVERPLFEMVSAAQTILPDSEGAIDGHLKEVGLTFHLLKDVPALIAKNIEKALIQAFSPLNI--NDWNSIFWIAHPGGPAILDQVE 320          

HSP 2 Score: 61.2326 bits (147), Expect = 7.430e-34
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ P+      LVG
Sbjct:  155 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPNEGHLDSLVG 217          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.432e-34
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP  + ERPLFEL +A Q  LP+++  IDG L E G++F L +++P +I  NIE    +    IG   ND+N +FW  HPGGPAIL+++E
Sbjct:  216 ALFGDGAAALIVGADPDTAIERPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLIEAFKPIGI--NDWNSIFWIAHPGGPAILDQVE 317          

HSP 2 Score: 61.2326 bits (147), Expect = 7.432e-34
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  152 GLRPSVKRLMMYQQGCFPGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVG 214          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: THS5_VITVI (Stilbene synthase 5 OS=Vitis vinifera GN=GSVIVT00007357001 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.433e-34
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDP-VPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDG+ A+IVGSDP V  ERPLF+L +A Q F+PN+   I G L E G++F L   +P +I +NIE    +    +G +N  +N +FW  HPGGPAIL+ +E
Sbjct:  213 ALFGDGSAAVIVGSDPNVSIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENIEKCLSQAFDPLGISN--WNSLFWIAHPGGPAILDAVE 314          

HSP 2 Score: 64.6994 bits (156), Expect = 7.433e-34
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL    +RVMLY  GC  G + LR AKD+AENN G+RVL+  SE T++ F+ PS +    LVG
Sbjct:  149 GLETSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSLVG 211          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_CATRO (Chalcone synthase OS=Catharanthus roseus GN=CHS PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.682e-34
Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  ERPLFEL +A Q  LP++   IDG L E G++F L +++P +I  NI     +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAIIVGSDPIPEIERPLFELVSAAQTLLPDSHGAIDGHLREVGLTFHLLKDVPGLISKNIGKALDEAFQPLGI--SDWNSIFWIAHPGGPAILDQVE 314          

HSP 2 Score: 60.077 bits (144), Expect = 9.682e-34
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL    +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRSSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSESHLDSLVG 211          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS5_PEA (Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.682e-34
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  E+P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +G   +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPAIVSKNIDKALVEAFQPLGI--SDYNSIFWIAHPGGPAILDQVE 314          

HSP 2 Score: 61.2326 bits (147), Expect = 9.682e-34
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS4_MEDSA (Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.682e-34
Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDPVP  E+P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +G   +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLGI--SDYNSIFWIAHPGGPAILDQVE 314          

HSP 2 Score: 61.2326 bits (147), Expect = 9.682e-34
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.682e-34
Identity = 47/104 (45.19%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+I+G+DP+P  E+P+FEL +  Q  LP+++ +IDG L E G++F L +++P +I  NI+    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  212 ALFGDGAAAIIIGADPIPEIEKPMFELVSTAQTILPDSDGSIDGHLREAGLTFHLLKDVPGLISKNIQKSLTEAFKPLGI--SDWNSIFWIAHPGGPAILDQVE 313          

HSP 2 Score: 62.3882 bits (150), Expect = 9.682e-34
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  148 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVG 210          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_EQUAR (Chalcone synthase OS=Equisetum arvense GN=CHS PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.260e-33
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLM-----------GNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+I+GSDP+P E P FELH +  N LP+++  IDG L E G++F L +++P II  NI    GK++           GN        N +FW  HPGGPAIL+++E
Sbjct:  219 ALFGDGAAAVILGSDPLPEENPCFELHWSGSNILPDSDGAIDGHLREVGLTFHLMKDVPGIISKNI----GKVLNDAFRSAFDESGNAEDRPASVNDIFWIAHPGGPAILDQVE 328          

HSP 2 Score: 64.3142 bits (155), Expect = 1.260e-33
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LRVAKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  155 GLRPSVKRLMMYQQGCFAGGTVLRVAKDVAENNKGARVLVVCSEITCVTFRGPSETHLDSLVG 217          
The following BLAST results are available for this feature:
BLAST of CX289588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS7_PICMA5.706e-3447.12Chalcone synthase 7 OS=Picea mariana GN=CSF7 PE=2 ... [more]
CHSB_SOLTU5.708e-3449.04Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B... [more]
CHS3_GERHY7.430e-3448.25Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHSY_CHRAE7.432e-3450.96Chalcone synthase OS=Chrysosplenium americanum GN=... [more]
THS5_VITVI7.433e-3449.04Stilbene synthase 5 OS=Vitis vinifera GN=GSVIVT000... [more]
CHSY_CATRO9.682e-3450.00Chalcone synthase OS=Catharanthus roseus GN=CHS PE... [more]
CHS5_PEA9.682e-3447.12Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 ... [more]
CHS4_MEDSA9.682e-3448.08Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=... [more]
CHS1_CITSI9.682e-3445.19Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHSY_EQUAR1.260e-3345.61Chalcone synthase OS=Equisetum arvense GN=CHS PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC02015A01SK IF1 Citrus clementina cDNA clone C02015A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289588 ID=CX289588; Name=CX289588; organism=Citrus clementina; type=EST; length=517bp
AATTCGGCACGAGGGGACTCAGTCCTGAGACTCAGCGTGTCATGCTCTAC
TTCATGGGCTGCTCTGGTGGAGTTTCTGGCCTGCGTGTGGCGAAGGACAT
TGCTGAAAACAATCCTGGAAGCAGAGTTCTGCTAGCTACTTCCGAAACTA
CAATTATTGGGTTCAAGCCACCAAGTGCAGAAAGGCCATATGACTTGGTT
GGCAGTCGCACTCTTTGGTGATGGTGCTGGAGCCATGATCGTGGGCTCAG
ACCCGGTTCCCAGTGAAAGGCCTCTCTTTGAGCTGCACACAGCAATCCAG
AACTTCTTGCCAAATACCGAAAAAACAATAGACGGGAGGCTTACGGAAGA
GGGGATTAGCTTTAAGCTGGCAAGAGAGCTGCCTCAGATAATCGAGGATA
ACATTGAAGGATTCTGTGGCAAGCTAATGGGCAATATTGGATTTACCAAC
AATGATTACAACAAGATGTTTTGGGCAGGTCATCCCGGAGGGCCTGCGAT
ATTGAATAAGTTGGAAA
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