CX289588

Overview
NameCX289588
Unique NameCX289588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS2_HORVU (Chalcone synthase 2 OS=Hordeum vulgare GN=CHS2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.785e-33
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVP-SERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A I+G+DP    E+P+F+L +A Q  LP +E  IDG LTE G++  L +++P +I +NIE         +G  N  +N +FW  HPGGPAIL+++E
Sbjct:  215 ALFGDGAAAAIIGADPDQLDEQPVFQLVSASQTILPESEGAIDGHLTEAGLTIHLLKDVPGLISENIEQALEDAFEPLGIHN--WNSIFWIAHPGGPAILDRVE 316          

HSP 2 Score: 66.6254 bits (161), Expect = 2.785e-33
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GLSP  +R+M+Y  GC GG + LR+AKDIAENN G+RVL+  SE T + F+ P       LVG
Sbjct:  151 GLSPTVKRLMMYQQGCFGGATVLRLAKDIAENNRGARVLVVCSEITAMAFRGPCKSHLDSLVG 213          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.785e-33
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP  S ERPL++L +A Q  LP+++  IDG L E G++F L +++P +I  NIE    +  G IG   +D+N +FW  HPGGPAIL+++E
Sbjct:  215 ALFGDGAAAVIVGADPDESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGI--SDWNSIFWIAHPGGPAILDQVE 316          

HSP 2 Score: 58.9214 bits (141), Expect = 2.785e-33
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ P       LVG
Sbjct:  151 GLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPVDTHLDSLVG 213          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSE_IPONI (Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.786e-33
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+I+GSDP P  ERPLF+L +A Q  LP++   IDG L E G++F L +++P +I  +IE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIIGSDPDPDLERPLFQLVSAAQTILPDSGGAIDGHLREVGLTFHLLKDVPGLISKHIEKSLNEAFQPLGI--HDWNSLFWIAHPGGPAILDQVE 314          

HSP 2 Score: 61.2326 bits (147), Expect = 2.786e-33
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + +R+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLQPSVKRFMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFRGPSDAHLDSLVG 211          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS8_MEDSA (Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.786e-33
Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDPVP  E+P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI     +    +G   +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGGIDGHLREAGLTFHLLKDVPGIVSKNINKALVEAFEPLGI--SDYNSIFWIAHPGGPAILDQVE 314          

HSP 2 Score: 61.2326 bits (147), Expect = 2.786e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS3_PEA (Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.786e-33
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  E P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +G   +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPLPEIENPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPAIVSKNIDKALVEAFQPLGI--SDYNSIFWIAHPGGPAILDQVE 314          

HSP 2 Score: 61.2326 bits (147), Expect = 2.786e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS1_SOLLC (Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS1 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.628e-33
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+I+GSDP+   ERPLFEL +A Q  +P++E  IDG L E G++F L +++P +I  NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAIIIGSDPIIGVERPLFELVSAAQTLVPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGI--SDWNSLFWIAHPGGPAILDQVE 314          

HSP 2 Score: 59.6918 bits (143), Expect = 3.628e-33
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 3
Query:   24 PETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  152 PSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSESHLDSLVG 211          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSE_IPOPU (Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.628e-33
Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+I+GSDP P  ERPLF+L +A Q  LP++   IDG L E G++F L +++P +I  +IE    +    +G    D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIIGSDPDPDLERPLFQLVSAAQTILPDSGGAIDGHLREVGLTFHLLKDVPGLISKHIEKSLNEAFQPLGI--RDWNSLFWIAHPGGPAILDQVE 314          

HSP 2 Score: 61.2326 bits (147), Expect = 3.628e-33
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + +R+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLQPSVKRFMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFRGPSDAHLDSLVG 211          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS9_DAUCA (Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.725e-33
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGAGA+IVGSDPV   E+PLFE+ +A Q  LP+++  IDG L E G++F L +++P +I  NI     +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAGAVIVGSDPVIGIEKPLFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIRKSLVEAFKPLGI--SDWNSIFWIAHPGGPAILDQVE 314          

HSP 2 Score: 60.077 bits (144), Expect = 4.725e-33
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN  +RVL+  SE T+I F+ P+      LVG
Sbjct:  149 GLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITVITFRGPNDTHLDSLVG 211          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS1_DAUCA (Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.725e-33
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGAGA+IVGSDPV   E+PLFE+ +A Q  LP+++  IDG L E G++F L +++P +I  NI     +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAGAVIVGSDPVIGIEKPLFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIRKSLVEAFKPLGI--SDWNSIFWIAHPGGPAILDQVE 314          

HSP 2 Score: 60.077 bits (144), Expect = 4.725e-33
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN  +RVL+  SE T+I F+ P+      LVG
Sbjct:  149 GLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITVITFRGPNDTHLDSLVG 211          
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS6_TRISU (Chalcone synthase 6 OS=Trifolium subterraneum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.725e-33
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDPVP  E+P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +    +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNI--SDYNSIFWIAHPGGPAILDQVE 314          

HSP 2 Score: 61.2326 bits (147), Expect = 4.725e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211          
The following BLAST results are available for this feature:
BLAST of CX289588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS2_HORVU2.785e-3346.15Chalcone synthase 2 OS=Hordeum vulgare GN=CHS2 PE=... [more]
CHS3_RUTGR2.785e-3350.00Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHSE_IPONI2.786e-3348.08Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV... [more]
CHS8_MEDSA2.786e-3348.08Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=... [more]
CHS3_PEA2.786e-3347.12Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 ... [more]
CHS1_SOLLC3.628e-3349.04Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS... [more]
CHSE_IPOPU3.628e-3348.08Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE... [more]
CHS9_DAUCA4.725e-3349.04Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 ... [more]
CHS1_DAUCA4.725e-3349.04Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 ... [more]
CHS6_TRISU4.725e-3347.12Chalcone synthase 6 OS=Trifolium subterraneum GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC02015A01SK IF1 Citrus clementina cDNA clone C02015A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289588 ID=CX289588; Name=CX289588; organism=Citrus clementina; type=EST; length=517bp
AATTCGGCACGAGGGGACTCAGTCCTGAGACTCAGCGTGTCATGCTCTAC
TTCATGGGCTGCTCTGGTGGAGTTTCTGGCCTGCGTGTGGCGAAGGACAT
TGCTGAAAACAATCCTGGAAGCAGAGTTCTGCTAGCTACTTCCGAAACTA
CAATTATTGGGTTCAAGCCACCAAGTGCAGAAAGGCCATATGACTTGGTT
GGCAGTCGCACTCTTTGGTGATGGTGCTGGAGCCATGATCGTGGGCTCAG
ACCCGGTTCCCAGTGAAAGGCCTCTCTTTGAGCTGCACACAGCAATCCAG
AACTTCTTGCCAAATACCGAAAAAACAATAGACGGGAGGCTTACGGAAGA
GGGGATTAGCTTTAAGCTGGCAAGAGAGCTGCCTCAGATAATCGAGGATA
ACATTGAAGGATTCTGTGGCAAGCTAATGGGCAATATTGGATTTACCAAC
AATGATTACAACAAGATGTTTTGGGCAGGTCATCCCGGAGGGCCTGCGAT
ATTGAATAAGTTGGAAA
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