CX289588

Overview
NameCX289588
Unique NameCX289588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS5_TRISU (Chalcone synthase 5 OS=Trifolium subterraneum GN=CHS5 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.725e-33
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDPVP  E+P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +    +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNI--SDYNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 61.2326 bits (147), Expect = 4.725e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS2_TRISU (Chalcone synthase 2 OS=Trifolium subterraneum GN=CHS2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.725e-33
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDPVP  E+P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +    +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNI--SDYNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 61.2326 bits (147), Expect = 4.725e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS1_TRISU (Chalcone synthase 1 OS=Trifolium subterraneum GN=CHS1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.725e-33
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDPVP  E+P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +    +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNI--SDYNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 61.2326 bits (147), Expect = 4.725e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_PUELO (Chalcone synthase OS=Pueraria lobata GN=CHS PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.154e-33
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  E+PL+EL    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +    +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGSDPIPQVEKPLYELVWTAQTIAPDSEGAIDGHLREVGLTFHLLKDVPGIVSKNIDKALFEAFNPLNI--SDYNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 60.8474 bits (146), Expect = 6.154e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS7_SOYBN (Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.154e-33
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  E+PL+EL    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +    +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGSDPIPQVEKPLYELVWTAQTIAPDSEGAIDGHLREVGLTFHLLKDVPGIVSKNIDKALFEAFNPLNI--SDYNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 60.8474 bits (146), Expect = 6.154e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS9_MEDSA (Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.154e-33
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  E+P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +    +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNI--SDYNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 61.2326 bits (147), Expect = 6.154e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS3_TRISU (Chalcone synthase 3 OS=Trifolium subterraneum GN=CHS3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.154e-33
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDPVP  E+P+F +    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +G   +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPVPEIEKPIFVMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLGI--SDYNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 61.2326 bits (147), Expect = 6.154e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS3_MEDSA (Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.154e-33
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  E+P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +    +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLVEAGLTFHLLKDVPGIVSKNIDKALIEAFQPLNI--SDYNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 61.2326 bits (147), Expect = 6.154e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.175e-33
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILN 507
            ALFGDGA A+IVGSDPVP  E+P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +G   +DYN +FW  HPGGPAIL+
Sbjct:  213 ALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLGI--SDYNSIFWIAHPGGPAILD 311

HSP 2 Score: 61.2326 bits (147), Expect = 6.175e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.184e-33
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  E+P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +    +DYN +FW  HPGGPAIL+++E
Sbjct:  109 ALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNI--SDYNSIFWIAHPGGPAILDQVE 210

HSP 2 Score: 61.2326 bits (147), Expect = 6.184e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:   45 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 107
The following BLAST results are available for this feature:
BLAST of CX289588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS5_TRISU4.725e-3347.12Chalcone synthase 5 OS=Trifolium subterraneum GN=C... [more]
CHS2_TRISU4.725e-3347.12Chalcone synthase 2 OS=Trifolium subterraneum GN=C... [more]
CHS1_TRISU4.725e-3347.12Chalcone synthase 1 OS=Trifolium subterraneum GN=C... [more]
CHSY_PUELO6.154e-3347.12Chalcone synthase OS=Pueraria lobata GN=CHS PE=2 S... [more]
CHS7_SOYBN6.154e-3347.12Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV... [more]
CHS9_MEDSA6.154e-3346.15Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=... [more]
CHS3_TRISU6.154e-3347.12Chalcone synthase 3 OS=Trifolium subterraneum GN=C... [more]
CHS3_MEDSA6.154e-3346.15Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1... [more]
CHS4_TRISU6.175e-3348.51Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]
CHS6_MEDSA6.184e-3346.15Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]

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Properties
Property NameValue
Genbank descriptionC02015A01SK IF1 Citrus clementina cDNA clone C02015A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289588 ID=CX289588; Name=CX289588; organism=Citrus clementina; type=EST; length=517bp
AATTCGGCACGAGGGGACTCAGTCCTGAGACTCAGCGTGTCATGCTCTAC
TTCATGGGCTGCTCTGGTGGAGTTTCTGGCCTGCGTGTGGCGAAGGACAT
TGCTGAAAACAATCCTGGAAGCAGAGTTCTGCTAGCTACTTCCGAAACTA
CAATTATTGGGTTCAAGCCACCAAGTGCAGAAAGGCCATATGACTTGGTT
GGCAGTCGCACTCTTTGGTGATGGTGCTGGAGCCATGATCGTGGGCTCAG
ACCCGGTTCCCAGTGAAAGGCCTCTCTTTGAGCTGCACACAGCAATCCAG
AACTTCTTGCCAAATACCGAAAAAACAATAGACGGGAGGCTTACGGAAGA
GGGGATTAGCTTTAAGCTGGCAAGAGAGCTGCCTCAGATAATCGAGGATA
ACATTGAAGGATTCTGTGGCAAGCTAATGGGCAATATTGGATTTACCAAC
AATGATTACAACAAGATGTTTTGGGCAGGTCATCCCGGAGGGCCTGCGAT
ATTGAATAAGTTGGAAA
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