CX289588

Overview
NameCX289588
Unique NameCX289588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.013e-33
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS--ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALF DGA A+IVGSDP  S  E+P+FE+ +A Q  LP+++  IDG L E G++F L +++P +I  NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  218 ALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGI--SDWNSLFWIAHPGGPAILDQVE 320

HSP 2 Score: 62.003 bits (149), Expect = 8.013e-33
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  154 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVG 216
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS8_BROFI (Chalcone synthase 8 OS=Bromheadia finlaysoniana GN=CHS8 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.013e-33
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDP-VPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP   +ERPLF+L +A Q  LP +E  IDG L E G++F L +++P +I  NI+         +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  214 ALFGDGAAAIIVGSDPDSATERPLFQLVSASQTILPESEGAIDGHLREIGLTFHLLKDVPGLISKNIQKCLLDAFKPLGV--HDWNSIFWIAHPGGPAILDQVE 315

HSP 2 Score: 62.7734 bits (151), Expect = 8.013e-33
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P   R MLY  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  150 GLRPSVNRFMLYQQGCFAGGTVLRLAKDLAENNAGARVLVVCSEITAVTFRGPSESHLDSLVG 212
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS4_BROFI (Chalcone synthase 4 OS=Bromheadia finlaysoniana GN=CHS4 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.013e-33
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDP-VPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP   +ERPLF+L +A Q  LP +E  IDG L E G++F L +++P +I  NI+         +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  214 ALFGDGAAAIIVGSDPDSATERPLFQLVSASQTILPESEGAIDGHLREIGLTFHLLKDVPGLISKNIQKCLLDAFKPLGV--HDWNSIFWIAHPGGPAILDQVE 315

HSP 2 Score: 62.7734 bits (151), Expect = 8.013e-33
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P   R MLY  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  150 GLRPSVNRFMLYQQGCFAGGTVLRLAKDLAENNAGARVLVVCSEITAVTFRGPSESHLDSLVG 212
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS3_BROFI (Chalcone synthase 3 OS=Bromheadia finlaysoniana GN=CHS3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.013e-33
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDP-VPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP   +ERPLF+L +A Q  LP +E  IDG L E G++F L +++P +I  NI+         +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  214 ALFGDGAAAIIVGSDPDSATERPLFQLVSASQTILPESEGAIDGHLREIGLTFHLLKDVPGLISKNIQKCLLDAFKPLGV--HDWNSIFWIAHPGGPAILDQVE 315

HSP 2 Score: 62.7734 bits (151), Expect = 8.013e-33
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P   R MLY  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  150 GLRPSVNRFMLYQQGCFAGGTVLRLAKDLAENNAGARVLVVCSEITAVTFRGPSESHLDSLVG 212
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_ARAAL (Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.014e-33
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS--ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALF DGA A+IVGSDP  S  E+P+FE+ +A Q  LP+++  IDG L E G++F L +++P +I  NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  214 ALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGI--SDWNSLFWIAHPGGPAILDQVE 316

HSP 2 Score: 62.003 bits (149), Expect = 8.014e-33
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  150 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVG 212
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_PERAE (Chalcone synthase OS=Persea americana GN=CHS PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.014e-33
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILN 507
            ALFGDGA A+IVG+DPVP  E P+FEL +A Q  LP+++  IDG L E G++F L + +P +I  NIE    +    +G   +D+N +FW  HPGGPAIL+
Sbjct:  214 ALFGDGAAALIVGADPVPGVENPMFELVSAGQTILPDSDGAIDGHLREVGLTFHLLKVVPGLISKNIEKSLVEAFEPLGI--SDWNSLFWIAHPGGPAILD 312

HSP 2 Score: 62.3882 bits (150), Expect = 8.014e-33
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  150 GLPPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVG 212
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS1_CICAR (Chalcone synthase 1 OS=Cicer arietinum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.015e-33
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P  E+P+FE+    Q   P++E  IDG L E G++F L +++P I+  NI+    +    +    +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALIEAFQPLNI--SDYNSIFWIAHPGGPAILDQVE 314

HSP 2 Score: 61.2326 bits (147), Expect = 8.015e-33
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS2_MAIZE (Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.043e-32
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A++VG+DP    ERPLF+L +A Q  LP++E  IDG L E G++F L +++P +I  NI          +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  217 ALFGDGAAAVVVGADPDDRVERPLFQLVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIGRALDDAFKPLGI--SDWNSIFWVAHPGGPAILDQVE 318

HSP 2 Score: 63.5438 bits (153), Expect = 1.043e-32
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P   R+M+Y  GC  G + LRVAKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  153 GLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSLVG 215
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS2_SECCE (Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.044e-32
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+I+G+DP  S ERPLF+L +A Q  LP++E  IDG L E G++F L +++P +I  NIE         +G   +D+N +FW  HPGGPAIL+ +E
Sbjct:  216 ALFGDGAAAVIIGADPDESIERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALEDAFKPLGI--DDWNSVFWIAHPGGPAILDMVE 317

HSP 2 Score: 60.8474 bits (146), Expect = 1.044e-32
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ P       LVG
Sbjct:  152 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVG 214
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSY_RAPSA (Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.044e-32
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS--ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALF DGA A+IVGSDP  S  E+P+FE+ +A Q  LP+++  IDG L E GI+F L +++P +I  NIE    +    +G   +D+N +FW  HPGGPAIL+ +E
Sbjct:  217 ALFSDGAAALIVGSDPDVSAGEKPIFEMVSAAQTILPDSDGAIDGHLREVGITFHLLKDVPGLISKNIEKSLDEAFKPLGI--SDWNSLFWIAHPGGPAILDDVE 319

HSP 2 Score: 62.003 bits (149), Expect = 1.044e-32
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  153 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVG 215
The following BLAST results are available for this feature:
BLAST of CX289588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSY_CARAN8.013e-3346.67Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHS8_BROFI8.013e-3349.04Chalcone synthase 8 OS=Bromheadia finlaysoniana GN... [more]
CHS4_BROFI8.013e-3349.04Chalcone synthase 4 OS=Bromheadia finlaysoniana GN... [more]
CHS3_BROFI8.013e-3349.04Chalcone synthase 3 OS=Bromheadia finlaysoniana GN... [more]
CHSY_ARAAL8.014e-3346.67Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=... [more]
CHSY_PERAE8.014e-3349.50Chalcone synthase OS=Persea americana GN=CHS PE=2 ... [more]
CHS1_CICAR8.015e-3346.15Chalcone synthase 1 OS=Cicer arietinum GN=CHS1 PE=... [more]
CHS2_MAIZE1.043e-3247.12Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1[more]
CHS2_SECCE1.044e-3249.04Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2... [more]
CHSY_RAPSA1.044e-3247.62Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC02015A01SK IF1 Citrus clementina cDNA clone C02015A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289588 ID=CX289588; Name=CX289588; organism=Citrus clementina; type=EST; length=517bp
AATTCGGCACGAGGGGACTCAGTCCTGAGACTCAGCGTGTCATGCTCTAC
TTCATGGGCTGCTCTGGTGGAGTTTCTGGCCTGCGTGTGGCGAAGGACAT
TGCTGAAAACAATCCTGGAAGCAGAGTTCTGCTAGCTACTTCCGAAACTA
CAATTATTGGGTTCAAGCCACCAAGTGCAGAAAGGCCATATGACTTGGTT
GGCAGTCGCACTCTTTGGTGATGGTGCTGGAGCCATGATCGTGGGCTCAG
ACCCGGTTCCCAGTGAAAGGCCTCTCTTTGAGCTGCACACAGCAATCCAG
AACTTCTTGCCAAATACCGAAAAAACAATAGACGGGAGGCTTACGGAAGA
GGGGATTAGCTTTAAGCTGGCAAGAGAGCTGCCTCAGATAATCGAGGATA
ACATTGAAGGATTCTGTGGCAAGCTAATGGGCAATATTGGATTTACCAAC
AATGATTACAACAAGATGTTTTGGGCAGGTCATCCCGGAGGGCCTGCGAT
ATTGAATAAGTTGGAAA
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