CX289590

Overview
NameCX289590
Unique NameCX289590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289590 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.593e-47
Identity = 86/158 (54.43%), Postives = 119/158 (75.32%), Query Frame = 3
Query:   93 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL 566
            +Y+VVGR LP+E +    +Y+M+++A + + AKS+FWYFLR+LKK KK+ G++++I +++E +P KIKN+GIWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+  IQIIK  +IPA   +R   KQFH+SKIKFPLV R     +RKL
Sbjct:    9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166          
BLAST of CX289590 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.998e-47
Identity = 87/170 (51.18%), Postives = 123/170 (72.35%), Query Frame = 3
Query:   93 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 602
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWYF+ +L+K+KK++G+++    +FEK+P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:    9 EYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CX289590 vs. ExPASy Swiss-Prot
Match: RL18A_CAEEL (60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.131e-45
Identity = 82/162 (50.62%), Postives = 120/162 (74.07%), Query Frame = 3
Query:   90 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTT 575
            ++Y VVGR +PTE +    I++M+++ATN V AKS+FWYF+  L++VKK+NG++L+I ++FEKNP  +KNYG+WL+Y SRTG+HNMY+EYRDTT+ GAV Q Y +M +RHR ++  I I+K  T+ A+  KR   K FH++KI+FPL  R  +  +  + TT
Sbjct:   11 NEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTT 172          
BLAST of CX289590 vs. ExPASy Swiss-Prot
Match: RL18A_ICTPU (60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.930e-45
Identity = 85/170 (50.00%), Postives = 120/170 (70.59%), Query Frame = 3
Query:   93 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 602
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWYF+ +L+K+KK+NG+ +    + E++P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RP  F
Sbjct:    9 EYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTRRPQTF 175          
BLAST of CX289590 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.806e-43
Identity = 87/173 (50.29%), Postives = 121/173 (69.94%), Query Frame = 3
Query:   87 FHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 602
            F +YQV+GR LPTES   PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN+I E +PTK+KN+G+W+RY SR+G HNMYKE RD +   AVE +Y +MA+RHR R   I I+K A I      KR+  KQF    +KFPL  R      +K   T+   RP+ F
Sbjct:    4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171          
BLAST of CX289590 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.806e-43
Identity = 83/170 (48.82%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   93 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 602
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWYF+ +L+K+KK+NG+ +    + EK P K+KN+G+WLR  SR+G HNMY+EYRD T + AV Q Y +M +RHR R+  I I+K   I A  C+R + KQFH+SKIKFPL  R +R   R+    +   RPN F
Sbjct:    9 EYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHNPRFTTKRPNTF 175          
BLAST of CX289590 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.690e-41
Identity = 84/171 (49.12%), Postives = 114/171 (66.67%), Query Frame = 3
Query:   93 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 602
            +YQVVGR +PTE +  PK++RM+L+A NE  AKS++WYFL+ + KVKK+ G+++AINEI E  P K K +GIW+RY SR+G HNMYKE+RDTT  GAVE MY +MA+RHR R   I+I+K   +  K   +R   KQ  N  +KFPL  R+        +  +   RP+ F
Sbjct:    5 EYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTF 175          
The following BLAST results are available for this feature:
BLAST of CX289590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_DROME4.593e-4754.4360S ribosomal protein L18a OS=Drosophila melanogas... [more]
RL18A_DANRE5.998e-4751.1860S ribosomal protein L18a OS=Danio rerio GN=rpl18... [more]
RL18A_CAEEL1.131e-4550.6260S ribosomal protein L18a OS=Caenorhabditis elega... [more]
RL18A_ICTPU1.930e-4550.0060S ribosomal protein L18a OS=Ictalurus punctatus ... [more]
RL20_YEAST1.806e-4350.2960S ribosomal protein L20 OS=Saccharomyces cerevis... [more]
RL18A_SALSA1.806e-4348.8260S ribosomal protein L18a OS=Salmo salar GN=rpl18... [more]
RL20_SCHPO1.690e-4149.1260S ribosomal protein L20 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionC02015A03SK IF1 Citrus clementina cDNA clone C02015A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289590 ID=CX289590; Name=CX289590; organism=Citrus clementina; type=EST; length=632bp
GAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGTTACGCTGCGGAGATCGTC
ACATCTTGTATTTCCTCGAAAATGGTCACTTTCAGGTTTCACCAGTATCA
GGTTGTTGGGAGAGCTCTTCCAACTGAGTCCGATGAGCATCCTAAGATTT
ACAGGATGAAGTTGTGGGCCACGAATGAGGTTCGAGCCAAGTCCAAGTTC
TGGTACTTTCTTAGAAAGCTCAAGAAGGTCAAGAAGAGTAATGGTCAAAT
GCTTGCCATTAACGAGATTTTTGAGAAGAACCCAACCAAGATCAAGAACT
ATGGCATCTGGTTGCGTTATCAGAGTCGAACTGGTTATCACAATATGTAC
AAGGAGTACCGTGATACCACTCTGAACGGGGCTGTGGAGCAGATGTACAC
TGAGATGGCTTCTCGCCATAGGGTCAGGTCTCCTTGCATTCAAATTATCA
AGACTGCTACCATCCCTGCCAAGCTATGCAAGAGAGAAAGCACCAAGCAG
TTCCACAATTCAAAAATCAAGTTTCCCTTGGTGTTCAGGAAGGTGAGACC
ACCAAGCAGGAAGCTGAGGACCACATACAAAGCAACAAGGCCTAACTTGT
TTATGTAACTCTCTTATCATTTGATAATTGAG
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