CX289591

Overview
NameCX289591
Unique NameCX289591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 1.980e-45
Identity = 83/136 (61.03%), Postives = 101/136 (74.26%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGP+QL+WNYNY  CG  +G   DLLNNPDL+A +     V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG G +    +RIGF+  +C  FG+ PG NLDC NQR +
Sbjct:  197 GRGPMQLSWNYNYGLCGRAIG--VDLLNNPDLVAND----AVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.586e-45
Identity = 83/142 (58.45%), Postives = 106/142 (74.65%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMA 428
            GRGPIQL++NYNY   GE +G  EDLLNNP+L+A++     V+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ AGR+PGYG+ TNIINGG+ECG+G +D   NRIGF+  +C   GI  G NLDC +QRP+   L A
Sbjct:  197 GRGPIQLSYNYNYGPAGEAIG--EDLLNNPELVASDP----VVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.378e-45
Identity = 83/145 (57.24%), Postives = 103/145 (71.03%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 437
            GRGP+QL+WNYNY +CG  +G   DLLNNPDLL+++      +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR+PGYG+ TNIINGG+ECG G N    +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  186 GRGPMQLSWNYNYGQCGRAIG--VDLLNNPDLLSSDP----TISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.677e-44
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQ+T+NYNY   G+ +G   DLLNNPDL+A++      +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  AGR+PGYG  TNIINGG+ECG+G +D   +RIGF+  +C   G+  GDNLDC NQRPY
Sbjct:  188 GRGPIQITYNYNYGPAGQAIG--SDLLNNPDLVASD----ATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.860e-44
Identity = 82/145 (56.55%), Postives = 106/145 (73.10%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 437
            GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFK+A+WFWMT Q PKPSCH+VII  W PS+ D  A RLPG+G+ TNIINGG+ECG G ++  ++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  190 GRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDP----VISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.860e-44
Identity = 83/148 (56.08%), Postives = 106/148 (71.62%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 446
            GRGPIQ++WNYNY +CG  +G   DLLN PDL+AT+     V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG G +   ++RIGFF  +C   G+  G+NLDC +Q P+G +L+   + +S
Sbjct:  186 GRGPIQISWNYNYGQCGRAIG--VDLLNKPDLVATDS----VISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.878e-44
Identity = 83/148 (56.08%), Postives = 105/148 (70.95%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 446
            GRGPIQ++WNYNY +CG  +G   DLLN PDL+AT+     V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG G +   ++RIGFF  +C   G+  G+NLDC +Q P+G +L    + +S
Sbjct:  185 GRGPIQISWNYNYGQCGRAIG--VDLLNKPDLVATDS----VISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 4.878e-44
Identity = 82/145 (56.55%), Postives = 101/145 (69.66%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 437
            GRGP+QL+WNYNY +CG  +G   DLLNNPDLL+++      +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR  GYG+ TNIINGG+ECG G N    +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  164 GRGPMQLSWNYNYGQCGRAIG--VDLLNNPDLLSSDP----TISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.419e-43
Identity = 78/136 (57.35%), Postives = 100/136 (73.53%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQLT   NY R G+G+G G+DL+NNPDL+AT+     ++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC  G N A  +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  119 GRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDP----IISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.854e-43
Identity = 78/136 (57.35%), Postives = 100/136 (73.53%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGP+QL+WNYNY +CG  +G   DLLNNPDL++ +     V++FK+AIWFWMT Q PKPSCH VI+ +W+PS  D  AGR+PGYG+ TNIINGG+ECG G +    +RIGF+  +C   G+ PG NLDC NQR +
Sbjct:  182 GRGPMQLSWNYNYGQCGRAIG--SDLLNNPDLVSNDP----VIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
The following BLAST results are available for this feature:
BLAST of CX289591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_ARATH1.980e-4561.03Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI9_ORYSJ2.586e-4558.45Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_GOSHI3.378e-4557.24Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI3_ORYSJ1.677e-4459.56Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_SOLTU2.860e-4456.55Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIT_PHAVU2.860e-4456.08Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU4.878e-4456.08Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_GOSHI4.878e-4456.55Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHIA_SOLCI1.419e-4357.35Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI2_BRANA1.854e-4357.35Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02015A05SK IF1 Citrus clementina cDNA clone C02015A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289591 ID=CX289591; Name=CX289591; organism=Citrus clementina; type=EST; length=501bp
ATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGC
GGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAATCCAGACCTTCT
TGCTACTAATGATAAAGAAGGACGAGTACTATCATTCAAGTCAGCAATCT
GGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATT
ATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCC
GGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCT
ACGGTGGGAATGACGCTGCACGTAACCGTATTGGGTTCTTTACCACTTTC
TGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAACCA
ACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATCATGAT
CAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTA
G
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