CX289591

Overview
NameCX289591
Unique NameCX289591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.129e-43
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQLT   NY R G+G+G G++L+NNPDL+AT+     ++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A R+PGYG+ TNIING  ECG G N AA +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  119 GRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDP----IISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.677e-42
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQLT NYNY   G+ +   EDL+NNPDLL+TN      +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIINGGIECG+G ++   +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:  190 GRGPIQLTHNYNYGLAGQAIK--EDLINNPDLLSTNP----TVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.017e-41
Identity = 78/145 (53.79%), Postives = 104/145 (71.72%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 437
            GRGPIQ+++NYNY + G+ +G   DL+NNPDL+AT+     V+SFK+A WFWMT Q PKPSCH VI   W PS  D +AGRLPG+G+ TNIINGG+ECG G     ++RIGF+  +C    +  G+NLDC+NQRP+G  L+  ++
Sbjct:  176 GRGPIQISYNYNYGQAGKAIG--VDLVNNPDLVATD----AVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.735e-41
Identity = 77/137 (56.20%), Postives = 98/137 (71.53%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 413
            GRGPIQ+++NYNY   G  +G   +LLNNPDL+A +     V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D   GR+PG+G+ TNIINGG+EC  G N    NRIGF+  +C   G+ PG+NLDC+NQRP+G
Sbjct:  116 GRGPIQISYNYNYGAAGSAIG--VNLLNNPDLVAND----AVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.266e-41
Identity = 82/141 (58.16%), Postives = 97/141 (68.79%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAA-RNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNL 422
            GRGPIQL+WNYNY  CG+ L     LL  P+L+ T+     V+SFK+AIWFWM  Q PKPSCH VI   W PSA D+ AGR+PGYG+ TNIINGGIECG GG +AA  +RIGF+  +C   G   G NLDC  QRP+G  L
Sbjct:  199 GRGPIQLSWNYNYGLCGDDLKL--PLLQEPELVETDP----VISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.959e-41
Identity = 79/137 (57.66%), Postives = 98/137 (71.53%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 413
            GRGPIQLT   NY + G  +G  ++L+NNPDL+AT+      +SFK+AIWFWMT Q  KPS H+VII  W PSA D  A R+PGYG+ TNIINGGIECG G NDA  +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:  121 GRGPIQLTNRNNYEKAGTAIG--QELVNNPDLVATD----ATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.865e-41
Identity = 78/136 (57.35%), Postives = 97/136 (71.32%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQL++N+NY   G  +G   DLL+NPDL+AT+      +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG+G +D   NRIGF+  +CG FGI  G NLDC NQRP+
Sbjct:  200 GRGPIQLSFNFNYGPAGRAIG--VDLLSNPDLVATD----ATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 8.610e-41
Identity = 73/136 (53.68%), Postives = 98/136 (72.06%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQ+++NYNY   G+ +G   +LL+NPDL+A++      +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG+G +    +RIGF+  +C   G+  G NLDC NQRP+
Sbjct:  192 GRGPIQISYNYNYGPAGQAIG--SNLLSNPDLVASD----ATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 8.610e-41
Identity = 76/138 (55.07%), Postives = 103/138 (74.64%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYG-GNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 413
            GRGPIQLT  YNY   G+ LG   DL+NNPDL++++     V++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG G   D A++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:  123 GRGPIQLTHKYNYQLAGDALGL--DLVNNPDLVSSDP----VVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.581e-40
Identity = 78/136 (57.35%), Postives = 96/136 (70.59%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQLT   NY   G+ +G  +DL+NNPDL+AT+      +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG G N    +RIGF+  +C    + PGDNLDC +QR +
Sbjct:  115 GRGPIQLTGQSNYDLAGQAIG--QDLVNNPDLVATD----ATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
The following BLAST results are available for this feature:
BLAST of CX289591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SOLLC4.129e-4357.35Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIX_PEA2.677e-4258.82Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIB_VITVI1.017e-4153.79Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHID_SOLLC1.735e-4156.20Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI6_POPTR2.266e-4158.16Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIQ_TOBAC2.959e-4157.66Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI2_ORYSJ3.865e-4157.35Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_ORYSJ8.610e-4153.68Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI11_ORYSJ8.610e-4155.07Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC5.581e-4057.35Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionC02015A05SK IF1 Citrus clementina cDNA clone C02015A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289591 ID=CX289591; Name=CX289591; organism=Citrus clementina; type=EST; length=501bp
ATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGC
GGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAATCCAGACCTTCT
TGCTACTAATGATAAAGAAGGACGAGTACTATCATTCAAGTCAGCAATCT
GGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATT
ATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCC
GGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCT
ACGGTGGGAATGACGCTGCACGTAACCGTATTGGGTTCTTTACCACTTTC
TGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAACCA
ACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATCATGAT
CAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTA
G
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