CX289591

Overview
NameCX289591
Unique NameCX289591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.289e-40
Identity = 80/136 (58.82%), Postives = 95/136 (69.85%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQLT   NY   G  LG   DL+ NPDL++T+     V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G   G NLDC NQR +
Sbjct:  130 GRGPIQLTGQSNYQAAGNALGL--DLVGNPDLVSTD----AVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.243e-39
Identity = 77/136 (56.62%), Postives = 95/136 (69.85%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQL+ NYNY   G  +G   DLL NPDL+AT+      +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+G+ TNIINGG+ECG+G +    +RIGF+  +C   G+  GDNLDC NQRP+
Sbjct:  136 GRGPIQLSHNYNYGPAGRAIG--VDLLRNPDLVATDP----TVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.243e-39
Identity = 78/136 (57.35%), Postives = 96/136 (70.59%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQL+ NYNY   G  +G   DLL NPDL+AT+   G    FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG+G +    +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  136 GRGPIQLSHNYNYGPAGRAIG--VDLLANPDLVATDATVG----FKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 160.229 bits (404), Expect = 4.725e-39
Identity = 75/136 (55.15%), Postives = 96/136 (70.59%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQL+ NYNY   G  +G   DLL NPDL+AT+      +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+G +    +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  188 GRGPIQLSHNYNYGPAGRAIG--VDLLRNPDLVATDP----TVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 6.171e-39
Identity = 73/137 (53.28%), Postives = 97/137 (70.80%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 413
            GRGPIQL++N+NY   G+ +G   DLL +PDL+A++      +SF +A WFWMT Q PKPSCH V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG+G +D   +RIGF+  +C   G+    NLDC +QRP+G
Sbjct:  195 GRGPIQLSYNFNYGPAGQAIGA--DLLGDPDLVASD----ATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 8.059e-39
Identity = 77/136 (56.62%), Postives = 94/136 (69.12%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQLT   NY + G  +   +DL+NNPDL+AT+      +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG G N A  +RIG++  +CG   + PGDNLDC NQR +
Sbjct:  121 GRGPIQLTNQNNYEKAGNAIR--QDLVNNPDLVATD----ATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.053e-38
Identity = 75/136 (55.15%), Postives = 95/136 (69.85%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQL+ NYNY   G  +G   DLL NPDL+AT+      +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+G +    +RIGF+  +C    +  G+NLDC NQRP+
Sbjct:  191 GRGPIQLSHNYNYGPAGRAIG--VDLLRNPDLVATDP----TVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.910e-38
Identity = 73/118 (61.86%), Postives = 89/118 (75.42%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCG 356
            GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFKSAIWFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG G +   ++RIGF+  +CG
Sbjct:  190 GRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDP----VISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 3.386e-37
Identity = 74/133 (55.64%), Postives = 90/133 (67.67%), Query Frame = 3
Query:   30 NYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGG-NDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLM 425
            NYNY  CG+ L     LL  P+L+ T+      ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGYG+ TNIINGGIECG GG N+A  NRIGF+ T+C   G   G NLDC  QRP+G  L+
Sbjct:  171 NYNYGLCGDDLNL--PLLQEPELVETDP----FIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.775e-37
Identity = 75/136 (55.15%), Postives = 92/136 (67.65%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQLT   NY   G+ +   +DL+NNPDL+AT+      +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG G N    +RIG++        + PGDNLDC NQR +
Sbjct:  122 GRGPIQLTGQSNYDLAGKAIE--QDLVNNPDLVATD----ATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
The following BLAST results are available for this feature:
BLAST of CX289591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI8_ORYSJ7.289e-4058.82Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE1.243e-3956.62Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_HORVU1.243e-3957.3526 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU4.725e-3955.1526 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI12_ORYSJ6.171e-3953.28Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIP_TOBAC8.059e-3956.62Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIA_SECCE1.053e-3855.15Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI4_SOLTU8.910e-3861.86Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_POPTR3.386e-3755.64Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_PETHY5.775e-3755.15Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02015A05SK IF1 Citrus clementina cDNA clone C02015A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289591 ID=CX289591; Name=CX289591; organism=Citrus clementina; type=EST; length=501bp
ATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGC
GGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAATCCAGACCTTCT
TGCTACTAATGATAAAGAAGGACGAGTACTATCATTCAAGTCAGCAATCT
GGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATT
ATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCC
GGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCT
ACGGTGGGAATGACGCTGCACGTAACCGTATTGGGTTCTTTACCACTTTC
TGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAACCA
ACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATCATGAT
CAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTA
G
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