CX289591

Overview
NameCX289591
Unique NameCX289591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.977e-34
Identity = 63/136 (46.32%), Postives = 91/136 (66.91%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQ++WN+NY   G+ LG   D L NP+++A        ++F++A+WFWMT +  KPSCH+V++ E++P   DV A R  G+GL TNI+NGG+EC   G+    NRIGF+  +C   G+  G NLDC +Q+P+
Sbjct:  161 GRGPIQISWNFNYGPAGQALGF--DGLRNPEIVANCSD----IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.271e-33
Identity = 67/136 (49.26%), Postives = 90/136 (66.18%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGPIQ+++NYNY   G+ +G   DLL NPDL+ +++     + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG G      +RIG++            DNLDC NQ+P+
Sbjct:   81 GRGPIQISYNYNYGAAGKAIG--VDLLRNPDLVTSDN----TVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.060e-33
Identity = 67/137 (48.91%), Postives = 86/137 (62.77%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 410
            GRGP+QL WNYNY  CG  LG  ++LL+ P+ +AT+     VLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC   G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  174 GRGPLQLRWNYNYGECGNYLG--QNLLDEPEKVATDP----VLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.628e-31
Identity = 67/144 (46.53%), Postives = 95/144 (65.97%), Query Frame = 3
Query:    6 RGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 434
            RGP+Q+ +NYNY   GE +G   DLL NP+L+AT+      ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  GGN  A +R+ F+  +C   G+  G NLDC  Q P+  ++M+ S
Sbjct:  202 RGPMQIAYNYNYGAAGEAIGA--DLLGNPELVATDP----TVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCA-GGNGGA-DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.126e-31
Identity = 67/144 (46.53%), Postives = 94/144 (65.28%), Query Frame = 3
Query:    6 RGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 434
            RGP+Q+ +NYNY   GE +G   DLL NP+L+AT+      ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  GGN  A +R+ F+  +C   G+  G NLDC  Q P+   +M+ S
Sbjct:  202 RGPMQIAYNYNYGAAGEAIGA--DLLGNPELVATDP----TVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCA-GGNGGA-DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.205e-20
Identity = 52/130 (40.00%), Postives = 70/130 (53.85%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDC 392
            GRGP+QL+WNYNY   G+ +G   D L NP+ +AT+       SFK+A+WFWMT                     +V++    G+G TT  ING +EC     D A +RI F+  +C  FG+ PGDNL C
Sbjct:  186 GRGPLQLSWNYNYALAGQAIGF--DGLGNPEKVATDVNT----SFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 3.520e-18
Identity = 51/129 (39.53%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    6 RGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAA--RNRIGFFTTFCGKFGIQPGDNL 386
            RGPIQLT N+NY   G+ +G  EDL+ NPDL+    ++  ++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+      +G +D A   + IGF+  +C   G+  G +L
Sbjct:  239 RGPIQLTHNFNYGLAGQAIG--EDLIQNPDLV----EKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISR----AFGHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.282e-17
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDC 392
            GRGPIQL+WNYNY  CG+ L    +LL  P+L+++N      ++F++ +WFWM +  P       ++++              G+G T   ING +EC  G + A   RI ++  +CG+ G+ PG NL C
Sbjct:  167 GRGPIQLSWNYNYGACGQSLNL--NLLGQPELVSSNP----TVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.980e-17
Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDC 392
            GRGP+Q++WNYNY   G+ +G   D L +PD +A +      +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      A   R+ ++  +C +FG+ PG NL C
Sbjct:  186 GRGPLQISWNYNYGPAGQNIGF--DGLRDPDRVAQDP----TISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 5.083e-17
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDC 392
            GRGP+QL+WNYNY+  G+ L    D LN+PD++  +     ++SFK+++WFW+     +     VI+D  +            G+G T  IINGG EC          R+G++  +C + G+ PG+NL C
Sbjct:  144 GRGPMQLSWNYNYIDAGKELHF--DGLNDPDIVGRDP----IISFKTSLWFWI-----RKGVQYVILDPNQ------------GFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
The following BLAST results are available for this feature:
BLAST of CX289591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI10_ORYSJ5.977e-3446.32Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_AVESA2.271e-3349.26Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI8_POPTR5.060e-3348.91Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ1.628e-3146.53Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.126e-3146.53Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIP_BETVU2.205e-2040.00Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
AGI_URTDI3.520e-1839.53Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI4_BRANA2.282e-1735.38Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI5_ORYSJ2.980e-1735.38Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA5.083e-1735.38Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC02015A05SK IF1 Citrus clementina cDNA clone C02015A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289591 ID=CX289591; Name=CX289591; organism=Citrus clementina; type=EST; length=501bp
ATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGC
GGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAATCCAGACCTTCT
TGCTACTAATGATAAAGAAGGACGAGTACTATCATTCAAGTCAGCAATCT
GGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATT
ATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCC
GGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCT
ACGGTGGGAATGACGCTGCACGTAACCGTATTGGGTTCTTTACCACTTTC
TGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAACCA
ACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATCATGAT
CAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTA
G
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