CX289591

Overview
NameCX289591
Unique NameCX289591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16
Identity = 43/130 (33.08%), Postives = 67/130 (51.54%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDC 392
            GRGP+Q++WN+NY   G+ +G   D L +PD +A +     VL+F++A+W+W        + H+  +                G+G T   ING +EC      A  NR+ ++  FC +FG+ PG NL C
Sbjct:  167 GRGPLQISWNFNYGPAGQSIGF--DGLGDPDAVARSP----VLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDC 392
            GRGP+Q++WN+NY   G+ +G   D L +PD +A +      +SFK+A+WFWM                     N+V+     G+G T   ING +EC      A   R+ ++  +C +FG+ PG NL C
Sbjct:  183 GRGPLQISWNFNYGPAGKNIGF--DGLRDPDKVAQDP----TISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.758e-15
Identity = 47/131 (35.88%), Postives = 68/131 (51.91%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARN-RIGFFTTFCGKFGIQPGDNLDC 392
            GRGP+Q++WNYNY   G  +G   D L +P  +A +     V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C + G+ PG NL C
Sbjct:  167 GRGPLQISWNYNYGPAGRAIGF--DGLGDPGRVARD----AVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.361e-14
Identity = 45/131 (34.35%), Postives = 67/131 (51.15%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARN-RIGFFTTFCGKFGIQPGDNLDC 392
            GRGP+Q++WNYNY   G  +G     L +P+ +A    +  V++FK+A+WFWM                     N+V+     G+G T   ING +EC  G N A  N R+G++  +C +  + PG NL C
Sbjct:  178 GRGPLQISWNYNYGPAGRDIGFNG--LADPNRVA----QDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECN-GNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.870e-14
Identity = 44/135 (32.59%), Postives = 65/135 (48.15%), Query Frame = 3
Query:    3 GRGPIQLTWNYNYLRCG-----EGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAARNRIGFFTTFCGKFGIQPGDNLDC 392
            GRGPIQL+WN+NY   G     +GLG  E + N+            V+SFK+A+W+WM    P       +I++              G+G T   ING +EC        + R+ ++T +C + G+  GDNL C
Sbjct:  168 GRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDV-----------VVSFKTALWYWMQHVRP-------VINQ--------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CX289591 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.398e-12
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 3
Query:  159 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 296
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CX289591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI6_ORYSJ4.303e-1633.08Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ5.620e-1633.85Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE4.758e-1535.88Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE2.361e-1434.35Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU6.870e-1432.59Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY8.398e-1263.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02015A05SK IF1 Citrus clementina cDNA clone C02015A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289591 ID=CX289591; Name=CX289591; organism=Citrus clementina; type=EST; length=501bp
ATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGC
GGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAATCCAGACCTTCT
TGCTACTAATGATAAAGAAGGACGAGTACTATCATTCAAGTCAGCAATCT
GGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATT
ATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCC
GGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCT
ACGGTGGGAATGACGCTGCACGTAACCGTATTGGGTTCTTTACCACTTTC
TGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAACCA
ACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATCATGAT
CAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTA
G
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