CX289593

Overview
NameCX289593
Unique NameCX289593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length450
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C90D2_ORYSJ (Cytochrome P450 90D2 OS=Oryza sativa subsp. japonica GN=CYP90D2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.279e-17
Identity = 39/115 (33.91%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            G  R+A+ +V + G+ IPKG+ +     + H D   +  P KF+P R++  D+   S+ PFG G  +CPG + ARL+  +F H+LV  FRW  +  ++ ++  P +  ++G+P+R
Sbjct:  370 GIMRKAVRDVEVKGHLIPKGWCVFVYFRSVHLDDTLYDEPYKFNPWRWKEKDMSNGSFTPFGGGQRLCPGLDLARLEASIFLHHLVTSFRW--VAEEDHIVNFPTVRLKRGMPIR 482          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C88A1_MAIZE (Cytochrome P450 88A1 OS=Zea mays GN=CYP88A1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.661e-17
Identity = 35/95 (36.84%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    4 TFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIP 288
            +FR+A  +V ++GY IPKG+K+     + H DP+ +P+P KFDPSR++G+     +++ FG G  +CPG + A+L++ VF H+ +  ++  +  P
Sbjct:  400 SFRQATRDVFVNGYLIPKGWKVQLWYRSVHMDPQVYPDPTKFDPSRWEGHSPRAGTFLAFGLGARLCPGNDLAKLEISVFLHHFLLGYKLARTNP 494          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP26A_XENLA (Cytochrome P450 26A1 OS=Xenopus laevis GN=cyp26a1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.131e-16
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQG---NDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            G FR AL    ++GY+IPKG+ + +++  TH + + FP+ +KF+P R+      D   F ++PFG G   C GKEFA++ L VF   L R   WE +     M  +P + P   LP +
Sbjct:  367 GGFRVALKTFVLNGYQIPKGWNVIYSIADTHGEADLFPDTDKFNPDRFLTPLPRDSSRFGFIPFGGGVRCCIGKEFAKILLKVFVVELCRNCDWELLNGSPAMTTSPIICPVDNLPAK 484          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP26A_HUMAN (Cytochrome P450 26A1 OS=Homo sapiens GN=CYP26A1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQ---GNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            G FR AL    ++GY+IPKG+ + +++  TH   E F N E+F+P R+      D   FS++PFG G   C GKEFA++ L +F   L R   W+ +     M  +P + P   LP R
Sbjct:  372 GGFRVALKTFELNGYQIPKGWNVIYSICDTHDVAEIFTNKEEFNPDRFMLPHPEDASRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARHCDWQLLNGPPTMKTSPTVYPVDNLPAR 489          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP26A_MOUSE (Cytochrome P450 26A1 OS=Mus musculus GN=Cyp26a1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.332e-16
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRY---QGNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            G FR AL    ++GY+IPKG+ + +++  TH   + F N E+F+P R+      D   FS++PFG G   C GKEFA++ L +F   L R   W+ +     M  +P + P   LP R
Sbjct:  372 GGFRVALKTFELNGYQIPKGWNVIYSICDTHDVADIFTNKEEFNPDRFIVPHPEDASRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARHCDWQLLNGPPTMKTSPTVYPVDNLPAR 489          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP26A_DANRE (Cytochrome P450 26A1 OS=Danio rerio GN=cyp26a1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.576e-16
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQG---NDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            G FR AL    ++GY+IPKG+ + +++  TH   + FPN E+F P R+      D   F+Y+PFG G  +C GKEFA++ L +F   L +   W        M   P + P   LP +
Sbjct:  368 GGFRVALKTFELNGYQIPKGWNVIYSICDTHDVADVFPNKEEFQPERFMSKGLEDGSRFNYIPFGGGSRMCVGKEFAKVLLKIFLVELTQHCNWILSNGPPTMKTGPTIYPVDNLPTK 485          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C90C1_ARATH (Cytochrome P450 90C1 OS=Arabidopsis thaliana GN=ROT3 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 9.576e-16
Identity = 39/118 (33.05%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQ---GNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            G +R+AL +V I GY IPKG+ +  +  + H D + + NP +FDP R+    G+      + PFG G  +CPG E ++L++ +F H+LV ++ W     +++++  P +  ++ LP+R
Sbjct:  393 GVWRKALKDVEIKGYLIPKGWCVLASFISVHMDEDIYDNPYQFDPWRWDRINGSANSSICFTPFGGGQRLCPGLELSKLEISIFLHHLVTRYSW--TAEEDEIVSFPTVKMKRRLPIR 508          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C90B1_ARATH (Cytochrome P450 90B1 OS=Arabidopsis thaliana GN=CYP90B1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 45/124 (36.29%), Postives = 66/124 (53.23%), Query Frame = 1
Query:   10 REALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDIVPFS------------YVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            R+AL +V   GY IP G+K+   ++A H D   +  P  F+P R+Q  +    S            Y+PFG GP +C G E A+L++ VF H+LV KF WE +  D++    P +    GLP+R
Sbjct:  386 RKALKDVRYKGYDIPSGWKVLPVISAVHLDNSRYDQPNLFNPWRWQQQNNGASSSGSGSFSTWGNNYMPFGGGPRLCAGSELAKLEMAVFIHHLVLKFNWE-LAEDDQPFAFPFVDFPNGLPIR 508          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C72B2_PINTA (Cytochrome P450 720B2 OS=Pinus taeda GN=CYP720B2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.752e-15
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    1 GTFREALTEV-TIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGND-----IVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            G FRE   ++ T  G+ IP+G+ ++  +  TH D +   +  KFDP R+Q +      +   S++PFG G  +CPG   A+++L +F HN V KFRWE  + D+K+   P     KGLP+R
Sbjct:  363 GVFRETKEDIKTKGGFVIPRGWTVYVFLTGTHLDEKYHSSALKFDPWRWQPHLQDQELLKNPSFMPFGGGARLCPGMHLAKMELALFLHNFVTKFRWE-ALQDDKISYFPFPRLIKGLPIR 482          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP26A_CHICK (Cytochrome P450 26A1 OS=Gallus gallus GN=CYP26A1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQG---NDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            G FR AL  + ++GY+IPKG+ + +++  TH   + F + ++F+P R+      D   FS++PFG G   C GKEFA++ L +F   L R   W+ +     M   P + P   LP +
Sbjct:  367 GGFRIALKTLELNGYQIPKGWNVIYSICDTHDVADLFTDKDEFNPDRFMSPSPEDSSRFSFIPFGGGLRSCVGKEFAKVLLKIFTVELARSCDWQLLNGPPTMKTGPIVYPVDNLPAK 484          
The following BLAST results are available for this feature:
BLAST of CX289593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
C90D2_ORYSJ2.279e-1733.91Cytochrome P450 90D2 OS=Oryza sativa subsp. japoni... [more]
C88A1_MAIZE8.661e-1736.84Cytochrome P450 88A1 OS=Zea mays GN=CYP88A1 PE=2 S... [more]
CP26A_XENLA1.131e-1636.44Cytochrome P450 26A1 OS=Xenopus laevis GN=cyp26a1 ... [more]
CP26A_HUMAN3.291e-1637.29Cytochrome P450 26A1 OS=Homo sapiens GN=CYP26A1 PE... [more]
CP26A_MOUSE7.332e-1636.44Cytochrome P450 26A1 OS=Mus musculus GN=Cyp26a1 PE... [more]
CP26A_DANRE9.576e-1635.59Cytochrome P450 26A1 OS=Danio rerio GN=cyp26a1 PE=... [more]
C90C1_ARATH9.576e-1633.05Cytochrome P450 90C1 OS=Arabidopsis thaliana GN=RO... [more]
C90B1_ARATH2.133e-1536.29Cytochrome P450 90B1 OS=Arabidopsis thaliana GN=CY... [more]
C72B2_PINTA4.752e-1537.19Cytochrome P450 720B2 OS=Pinus taeda GN=CYP720B2 P... [more]
CP26A_CHICK2.359e-1433.90Cytochrome P450 26A1 OS=Gallus gallus GN=CYP26A1 P... [more]

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Properties
Property NameValue
Genbank descriptionC02015A07SK IF1 Citrus clementina cDNA clone C02015A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289593 ID=CX289593; Name=CX289593; organism=Citrus clementina; type=EST; length=450bp
GGAACCTTTAGAGAAGCCCTTACAGAAGTCACTATTGATGGATATAAAAT
TCCCAAGGGATTTAAGTTACATTGGGCAGTAAATGCAACGCATAAAGACC
CGGAATGCTTTCCAAATCCAGAAAAGTTTGATCCATCAAGATACCAAGGA
AATGATATAGTTCCATTTTCTTATGTTCCATTTGGAGCAGGACCGCACAT
ATGCCCTGGAAAAGAGTTTGCTCGATTAAAATTACTTGTATTTTTTCACA
ATCTGGTCAGAAAATTCAGGTGGGAGAAAATAATACCCGATGAGAAGATG
ATAAGGAACCCAAATCTAATGCCCGAGAAAGGACTTCCAGTTCGCCTCTA
TCCCAACAATTAAACTCTAAATAATTATTATGATTAAATATTGTACTGTT
GTGTGTACAAATAAATTATGCTAAAAAAATTAATGCAATTTTATTAAAAA
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