CX289593

Overview
NameCX289593
Unique NameCX289593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length450
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C87A3_ORYSJ (Cytochrome P450 87A3 OS=Oryza sativa subsp. japonica GN=CYP87A3 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.690e-12
Identity = 37/118 (31.36%), Postives = 62/118 (52.54%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDIVPFS---YVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            G FR+AL +V I GY IP G+ +     A H +PE + +P  F+P R+QG   +      ++ FG G   C G + +++ +  F H+LV K+ W + +    ++R P L    G  ++
Sbjct:  393 GIFRKALQDVEIKGYTIPAGWGIMVCPPAVHLNPEIYEDPLAFNPWRWQGKPEITGGTKHFMAFGGGLRFCVGTDLSKVLMATFIHSLVTKYSW-RTVKGGNIVRTPGLSFPDGFHIQ 509          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: THAS_HUMAN (Thromboxane-A synthase OS=Homo sapiens GN=TBXAS1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1
Query:   10 REALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQG---NDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWE 276
            REA  +  + G +IP G  L  AV A H DPE +P+PE F+P R+         PF+Y+PFGAGP  C G     L++ +   +++ KFR++
Sbjct:  412 REAAQDCEVLGQRIPAGAVLEMAVGALHHDPEHWPSPETFNPERFTAEARQQHRPFTYLPFGAGPRSCLGVRLGLLEVKLTLLHVLHKFRFQ 503          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: THAH_ARATH (Cytochrome P450 708A2 OS=Arabidopsis thaliana GN=CYP708A2 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.766e-12
Identity = 39/115 (33.91%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    7 FREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDIVPFS--YVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            +R+A+ +V I GY IP G+ +     A H +   + NP +F+P R++G ++   S  ++ FG G   C G EFARL++ +F H+LV  + +  +  + + IR P     KGLP++
Sbjct:  359 YRKAVNDVEIKGYTIPAGWIVAVIPPAVHFNDAIYENPLEFNPWRWEGKELRSGSKTFMVFGGGVRQCVGAEFARLQISIFIHHLVTTYDF-SLAQESEFIRAPLPYFPKGLPIK 472          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP4S3_DROME (Probable cytochrome P450 4s3 OS=Drosophila melanogaster GN=Cyp4s3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/97 (35.05%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   10 REALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGND--IVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDE 294
            R+ L ++ +    +PKG  +   +   H+DP+ FP+PE+FDP R+  N+  + PF++  F AGP  C G++FA L+L      L+R +R+   +PD+
Sbjct:  370 RKVLEDLEVGKLTVPKGASISCLIYMLHRDPKNFPDPERFDPDRFLVNEKQMHPFAFAAFSAGPRNCIGQKFAMLELKTSLAMLLRSYRF---LPDK 463          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: THAS_MACFA (Thromboxane-A synthase OS=Macaca fascicularis GN=TBXAS1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.423e-12
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 1
Query:   10 REALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQG---NDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWE 276
            REA  +  + G +IP G  L  AV A H DPE +P+PE F+P R+         PF+Y+PFGAGP  C G     L++ +   +++ KF+++
Sbjct:  412 REAAQDCEVLGQRIPAGAVLEMAVGALHHDPEHWPSPETFNPERFTAEAQQQHRPFTYLPFGAGPRSCLGVRLGLLEVKLTLLHVLHKFQFQ 503          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C85A1_ORYSJ (Cytochrome P450 85A1 OS=Oryza sativa subsp. japonica GN=CYP85A1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.423e-12
Identity = 34/116 (29.31%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDIVPFS-YVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            G  R+   +V ++GY IPKG++++      + DP  +P+P  F+P R+   ++     ++ FG G  +CPGKE   +++  F H  V ++RWE+   +  +++ P +    GL +R
Sbjct:  351 GLLRKTTQDVEMNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLEKNMESHPHFMLFGGGSRMCPGKEVGTVEIATFLHYFVTQYRWEE-EGNNTILKFPRVEAPNGLHIR 465          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP138_MYCTU (Putative cytochrome P450 138 OS=Mycobacterium tuberculosis GN=cyp138 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   49 IPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWE 276
            IP+G+ +   +   H DP+ FP P++FDP RY G+   PF+++PFG G   C G  FA +++ V    ++R F  E
Sbjct:  337 IPRGYSIIINIAQIHGDPDVFPQPDRFDPQRYIGSKPSPFAWIPFGGGTRRCVGAAFANMEMDVVLRTVLRHFTLE 412          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP138_MYCBO (Putative cytochrome P450 138 OS=Mycobacterium bovis GN=cyp138 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   49 IPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWE 276
            IP+G+ +   +   H DP+ FP P++FDP RY G+   PF+++PFG G   C G  FA +++ V    ++R F  E
Sbjct:  337 IPRGYSIIINIAQIHGDPDVFPQPDRFDPQRYIGSKPSPFAWIPFGGGTRRCVGAAFANMEMDVVLRTVLRHFTLE 412          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C85A1_ARATH (Cytochrome P450 85A1 OS=Arabidopsis thaliana GN=CYP85A1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 37/116 (31.90%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDIVPF-SYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            G  R+   ++ I+GY IPKG++++      + D   + +P  F+P R+    +    S   FG G  +CPGKE   +++  F H  V ++RWE+I  DE M+  P +   KG  +R
Sbjct:  347 GVLRKTTRDLEINGYLIPKGWRIYVYTREINYDANLYEDPLIFNPWRWMKKSLESQNSCFVFGGGTRLCPGKELGIVEISSFLHYFVTRYRWEEIGGDELMV-FPRVFAPKGFHLR 461          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C72B1_PINTA (Abietadienol/abietadienal oxidase OS=Pinus taeda GN=CYP720B1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 40/117 (34.19%), Postives = 60/117 (51.28%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDIVPFSYV--PFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGLPVR 345
            G FRE   +  +    IPKG+ +   + ATH D +       F+P R++ +  V  +++  PFG G  +CPG   ARL+L +F H  + +FRWE  + DE     P     KG P+R
Sbjct:  361 GVFRETKEDTKVKDCLIPKGWVVFAFLTATHLDEKFHNEALTFNPWRWELDQDVSNNHLFSPFGGGARLCPGSHLARLELALFLHIFITRFRWE-ALADEHPSYFPLPYLAKGFPMR 476          
The following BLAST results are available for this feature:
BLAST of CX289593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
C87A3_ORYSJ1.690e-1231.36Cytochrome P450 87A3 OS=Oryza sativa subsp. japoni... [more]
THAS_HUMAN2.208e-1239.13Thromboxane-A synthase OS=Homo sapiens GN=TBXAS1 P... [more]
THAH_ARATH3.766e-1233.91Cytochrome P450 708A2 OS=Arabidopsis thaliana GN=C... [more]
CP4S3_DROME4.918e-1235.05Probable cytochrome P450 4s3 OS=Drosophila melanog... [more]
THAS_MACFA6.423e-1238.04Thromboxane-A synthase OS=Macaca fascicularis GN=T... [more]
C85A1_ORYSJ6.423e-1229.31Cytochrome P450 85A1 OS=Oryza sativa subsp. japoni... [more]
CP138_MYCTU1.096e-1138.16Putative cytochrome P450 138 OS=Mycobacterium tube... [more]
CP138_MYCBO1.096e-1138.16Putative cytochrome P450 138 OS=Mycobacterium bovi... [more]
C85A1_ARATH1.096e-1131.90Cytochrome P450 85A1 OS=Arabidopsis thaliana GN=CY... [more]
C72B1_PINTA1.096e-1134.19Abietadienol/abietadienal oxidase OS=Pinus taeda G... [more]

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Properties
Property NameValue
Genbank descriptionC02015A07SK IF1 Citrus clementina cDNA clone C02015A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289593 ID=CX289593; Name=CX289593; organism=Citrus clementina; type=EST; length=450bp
GGAACCTTTAGAGAAGCCCTTACAGAAGTCACTATTGATGGATATAAAAT
TCCCAAGGGATTTAAGTTACATTGGGCAGTAAATGCAACGCATAAAGACC
CGGAATGCTTTCCAAATCCAGAAAAGTTTGATCCATCAAGATACCAAGGA
AATGATATAGTTCCATTTTCTTATGTTCCATTTGGAGCAGGACCGCACAT
ATGCCCTGGAAAAGAGTTTGCTCGATTAAAATTACTTGTATTTTTTCACA
ATCTGGTCAGAAAATTCAGGTGGGAGAAAATAATACCCGATGAGAAGATG
ATAAGGAACCCAAATCTAATGCCCGAGAAAGGACTTCCAGTTCGCCTCTA
TCCCAACAATTAAACTCTAAATAATTATTATGATTAAATATTGTACTGTT
GTGTGTACAAATAAATTATGCTAAAAAAATTAATGCAATTTTATTAAAAA
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