CX289593

Overview
NameCX289593
Unique NameCX289593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length450
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP51_MYCVP (Lanosterol 14-alpha demethylase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=cyp51 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.431e-11
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   10 REALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRY----QGNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDE 294
            R A  E  + GY I KG  +  +   +++ PE FPNP+ FDP RY    Q + I  ++++PFGAG H C G  FA++++   F  L+R++ +E   P E
Sbjct:  327 RVAQDEFEVAGYPIHKGQMVAASPAISNRIPEDFPNPDDFDPDRYEKPRQEDLINRWTWIPFGAGKHRCVGAAFAQMQIKAIFSVLLREYEFEMAQPPE 425          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP3A9_RAT (Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.869e-11
Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = 1
Query:   10 REALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRY---QGNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDE---KMIRNPNLMPEKGL 336
            R   T+V I+G  IPKG  +     A HKDP  +P PE+F P R+     ++I P+ Y+PFG GP  C G  FA + + V    +++ F ++     +   K+ +   L PEK L
Sbjct:  375 RVCKTDVEINGVFIPKGTVVMIPTFALHKDPHYWPEPEEFRPERFSKKNQDNINPYMYLPFGNGPRNCIGMRFALMNMKVALFRVLQNFSFQPCKETQIPLKLSKQGLLQPEKPL 489          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C71BD_ARATH (Cytochrome P450 71B13 OS=Arabidopsis thaliana GN=CYP71B13 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11
Identity = 39/115 (33.91%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    4 TFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDI----VPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGL 336
            T REA  +V I GY IPK   +H  + A H++P  + +PE F P R+  N I    + F  +PFG+G  ICPG       + +   NL+ +F W+  +P+   + + +L    GL
Sbjct:  366 TPREASKDVKIGGYNIPKKTWIHVNIWAIHRNPNVWKDPEAFIPERFMDNQIDYKGLNFELLPFGSGRRICPGIGMGMALIHLTLINLLYRFDWK--LPEGMEVEDVDLEESYGL 478          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP4D8_DROME (Cytochrome P450 4d8 OS=Drosophila melanogaster GN=Cyp4d8 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.163e-11
Identity = 28/74 (37.84%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   49 IPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQ-GNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKF 267
            IP G ++   +   H+ PE FPNP++F P R++ G+ + PF  +PF AGP  C G++FA+L++ +    +VR++
Sbjct:  357 IPAGSEIIIGIFGVHRQPETFPNPDEFIPERHENGSRVAPFKMIPFSAGPRNCIGQKFAQLEMKMMLAKIVREY 430          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP26C_HUMAN (Cytochrome P450 26C1 OS=Homo sapiens GN=CYP26C1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.163e-11
Identity = 37/103 (35.92%), Postives = 53/103 (51.46%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNP-EKFDPSRYQG------NDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIP 288
            G +R AL    +DGY+IPKG+ + +++  TH+    + +P E FDP R+             F Y+PFG G   C G+E A+  L +    LVR  RWE   P
Sbjct:  385 GGYRTALRTFELDGYQIPKGWSVMYSIRDTHETAAVYRSPPEGFDPERFGAAREDSRGASSRFHYIPFGGGARSCLGQELAQAVLQLLAVELVRTARWELATP 487          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C80A1_BERST (Berbamunine synthase OS=Berberis stolonifera GN=CYP80A1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.163e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   40 GYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDI----VPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWE--KIIPDEKM 300
            GY IPKG  +H   +A  +DP+ + +P KF P R+  +DI      F ++PFG+G  ICPG+  A   + +   +LV  F WE    +P+EK+
Sbjct:  371 GYTIPKGMDVHVNAHAIGRDPKDWKDPLKFQPERFLDSDIEYNGKQFQFIPFGSGRRICPGRPLAVRIIPLVLASLVHAFGWELPDGVPNEKL 463          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C71BB_ARATH (Cytochrome P450 71B11 OS=Arabidopsis thaliana GN=CYP71B11 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.437e-11
Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 1
Query:   10 REALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRYQGNDI----VPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRNPNLMPEKGL 336
            REA  +V I GY IPK   +H  + A H++P  + +PE F P R+  N I    + F ++PFG+G  +CPG       + +   NL+ +F W+  +P+   + + +L    GL
Sbjct:  368 REASKDVKIGGYDIPKKTWIHVNIWAIHRNPNVWKDPEAFIPERFMDNQIDYKGLNFEFLPFGSGRRMCPGIGMGMALVHLTLINLLYRFDWK--LPEGMEVEDVDLEESYGL 478          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: C12C1_DROME (Probable cytochrome P450 12c1, mitochondrial OS=Drosophila melanogaster GN=Cyp12c1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.437e-11
Identity = 39/111 (35.14%), Postives = 53/111 (47.75%), Query Frame = 1
Query:    1 GTFREALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRY------------QGNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEK 297
            G  R A  +V +DGY+IPKG KL    +   KD   +P  ++F P R+               D+  F Y+PFG GP +C GK    L++ +   NLVR F  E     EK
Sbjct:  391 GNARSAGADVVLDGYRIPKGTKLLMTNSFLLKDDRLYPRAKEFIPERWLRRKDDDKSDVLMNKDLNAFIYLPFGFGPRMCVGKRIVDLEMELTVANLVRNFHIEYNYSTEK 501          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP3AD_MOUSE (Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 1
Query:   10 REALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRY---QGNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDE---KMIRNPNLMPEKGL 336
            R   T+V I+G  IPKG  +     A HKDP+ +P PE+F P R+     + I P+ Y+PFG+GP  C G  FA + + V    +++ F  +     E   K+ +   L PE  L
Sbjct:  375 RVCKTDVEINGLFIPKGTVVMIPTFALHKDPKYWPEPEEFRPERFSKKNQDSINPYMYLPFGSGPRNCIGMRFALINMKVALVRVLQNFTVQPCKETEIPLKLSKQGLLQPENPL 489          
BLAST of CX289593 vs. ExPASy Swiss-Prot
Match: CP2J1_RABIT (Cytochrome P450 2J1 OS=Oryctolagus cuniculus GN=CYP2J1 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 35/102 (34.31%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   10 REALTEVTIDGYKIPKGFKLHWAVNATHKDPECFPNPEKFDPSRY--QGNDIVPFSYVPFGAGPHICPGKEFARLKLLVFFHNLVRKFRWEKIIPDEKMIRN 309
            RE   + T+ GY +PKG  +   + A HKDPE +  P+ F+P  +   G      +++PF  G   C G++ A+ +L +FF +L++KF + K   DEK+  N
Sbjct:  381 REVTVDTTLAGYHLPKGTVVLTNLTALHKDPEEWATPDTFNPEHFLENGQFKKKEAFIPFSIGKRACLGEQLAKSELFIFFTSLMQKFTF-KPPSDEKLTLN 481          
The following BLAST results are available for this feature:
BLAST of CX289593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CP51_MYCVP1.431e-1137.37Lanosterol 14-alpha demethylase OS=Mycobacterium v... [more]
CP3A9_RAT1.869e-1134.78Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9... [more]
C71BD_ARATH3.188e-1133.91Cytochrome P450 71B13 OS=Arabidopsis thaliana GN=C... [more]
CP4D8_DROME4.163e-1137.84Cytochrome P450 4d8 OS=Drosophila melanogaster GN=... [more]
CP26C_HUMAN4.163e-1135.92Cytochrome P450 26C1 OS=Homo sapiens GN=CYP26C1 PE... [more]
C80A1_BERST4.163e-1137.63Berbamunine synthase OS=Berberis stolonifera GN=CY... [more]
C71BB_ARATH5.437e-1132.74Cytochrome P450 71B11 OS=Arabidopsis thaliana GN=C... [more]
C12C1_DROME5.437e-1135.14Probable cytochrome P450 12c1, mitochondrial OS=Dr... [more]
CP3AD_MOUSE7.102e-1134.78Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE... [more]
CP2J1_RABIT7.102e-1134.31Cytochrome P450 2J1 OS=Oryctolagus cuniculus GN=CY... [more]

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Properties
Property NameValue
Genbank descriptionC02015A07SK IF1 Citrus clementina cDNA clone C02015A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289593 ID=CX289593; Name=CX289593; organism=Citrus clementina; type=EST; length=450bp
GGAACCTTTAGAGAAGCCCTTACAGAAGTCACTATTGATGGATATAAAAT
TCCCAAGGGATTTAAGTTACATTGGGCAGTAAATGCAACGCATAAAGACC
CGGAATGCTTTCCAAATCCAGAAAAGTTTGATCCATCAAGATACCAAGGA
AATGATATAGTTCCATTTTCTTATGTTCCATTTGGAGCAGGACCGCACAT
ATGCCCTGGAAAAGAGTTTGCTCGATTAAAATTACTTGTATTTTTTCACA
ATCTGGTCAGAAAATTCAGGTGGGAGAAAATAATACCCGATGAGAAGATG
ATAAGGAACCCAAATCTAATGCCCGAGAAAGGACTTCCAGTTCGCCTCTA
TCCCAACAATTAAACTCTAAATAATTATTATGATTAAATATTGTACTGTT
GTGTGTACAAATAAATTATGCTAAAAAAATTAATGCAATTTTATTAAAAA
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