CX289804

Overview
NameCX289804
Unique NameCX289804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KIF2B_MACFA (Kinesin-like protein KIF2B OS=Macaca fascicularis GN=KIF2B PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.311e-15
Identity = 55/152 (36.18%), Postives = 83/152 (54.61%), Query Frame = 1
Query:   13 EVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSER-VGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSS-LGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIES 462
            EV  L++ G   R+   T+ N  SSRSH + ++ +K    ++G+ +     LVDLAG+ER     +   +R  E   INKSL AL + I AL     H P+R SKLT +L+ S +G +  T M   ISP  +    TL +L +A+RV+ + +
Sbjct:  396 EVLNLVELGNSCRTSRQTSVNAHSSRSHAVFQIILKSGGKLHGKFS-----LVDLAGNERGADTTKASRKRQLEGAEINKSLLALKECILALGQNKPHTPFRASKLTQVLRDSFIGRNSSTCMIATISPGMTSCENTLNTLRYANRVKELNA 542          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KIF2B_HUMAN (Kinesin-like protein KIF2B OS=Homo sapiens GN=KIF2B PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 55/148 (37.16%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   13 EVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSER-VGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSS-LGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450
            EV  L++ G   R+   T+ N  SSRSH + ++ +K   +++G+ +     LVDLAG+ER     +   +R  E   INKSL AL + I AL     H P+R SKLT +L+ S +G +  T M   ISP  +    TL +L +A+RV+
Sbjct:  399 EVLNLVEIGNSCRTSRQTSVNAHSSRSHAVFQIILKSGRIMHGKFS-----LVDLAGNERGADTTKASRKRQLEGAEINKSLLALKECILALGQNKPHTPFRASKLTLVLRDSFIGQNSSTCMIATISPGMTSCENTLNTLRYANRVK 541          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: YOG1_SCHPO (Kinesin-like motor protein C15D4.01c OS=Schizosaccharomyces pombe GN=SPBC15D4.01c PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 55/165 (33.33%), Postives = 80/165 (48.48%), Query Frame = 1
Query:    7 TREVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISAL----ASKSGHIPYRNSKLTHILQSS--LGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQS 483
            T E ++L++   ++R   ST +N +SSRSH ++ + +      + +     + LVDLAGSER    E  G  L+E   IN+SL  LG  + AL      K   IP+R SKLT +L  S  L G     M V I P  S   E    + +++  R I   P  + S
Sbjct:  238 TTEAYKLIQKVLQLRKSTSTKSNSVSSRSHLIMSIELFKVCTKSNKFESCQIDLVDLAGSERTRSAETSGLLLREGASINRSLLTLGQCLEALRRKHEGKQHIIPFRQSKLTELLFHSGHLSGLAGINMLVNIDPFGS-FDENAQVMRYSANAREILPPPLNENS 401          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KI26B_MOUSE (Kinesin-like protein KIF26B OS=Mus musculus GN=Kif26b PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  106 RVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGG-DCKTLMFVQISPSSSDLGETLCSLNFASRV 447
            R+   G+  ++G +++ HL  +DL    +      +G        +  SLSALG+VI AL + S HIPY+ SKLT +L+ SLG  +C+T M   IS ++S   ETL ++  ASRV
Sbjct:  691 RMEKSGKGGMSGGRSRLHL--IDLGSCVKALSKNREG-----GSGLCLSLSALGNVILALVNGSKHIPYKESKLTMLLRESLGNVNCRTTMIAHISAAASSYAETLSTIQIASRV 798          
The following BLAST results are available for this feature:
BLAST of CX289804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
KIF2B_MACFA1.311e-1536.18Kinesin-like protein KIF2B OS=Macaca fascicularis ... [more]
KIF2B_HUMAN1.713e-1537.16Kinesin-like protein KIF2B OS=Homo sapiens GN=KIF2... [more]
YOG1_SCHPO1.357e-1233.33Kinesin-like motor protein C15D4.01c OS=Schizosacc... [more]
KI26B_MOUSE5.702e-1138.26Kinesin-like protein KIF26B OS=Mus musculus GN=Kif... [more]

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Properties
Property NameValue
Genbank descriptionC02017C11SK IF1 Citrus clementina cDNA clone C02017C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289804 ID=CX289804; Name=CX289804; organism=Citrus clementina; type=EST; length=572bp
TTCGGCACGAGGGAAGTGTGGGAGCTACTTAAGTCTGGAGCCAGAGTTAG
ATCTGTTGGATCCACCAATGCCAATGAGCTCAGTAGCCGGTCTCACTGCT
TGTTGCGAGTAACTGTGAAGGGGGAGAATCTGATAAATGGGCAGAAGACT
AAGAGTCACCTCTGGCTGGTAGACTTGGCAGGCAGTGAACGTGTGGGGAA
GATTGAAGTTGATGGTGAGAGGTTGAAGGAATCTCAGTTTATAAATAAAT
CTCTCTCTGCACTTGGTGATGTTATATCTGCTCTGGCATCTAAATCAGGC
CACATTCCGTACAGGAACTCGAAGCTCACTCATATTTTGCAGAGCTCTCT
AGGTGGAGATTGCAAGACTCTGATGTTTGTCCAGATCAGCCCAAGTTCTT
CAGACCTTGGAGAGACCCTTTGTTCACTGAATTTTGCCAGCCGAGTTCGG
GGAATTGAAAGTGGTCCTGCTCGGAAACAATCAGACATTTCTGAACTTTT
TAAGTACAAGCAAATGGCAGAAAAGTTAAAGCAGGATGAGAAGGAGACGA
AGAAGTTGCAGGACAATTTGCA
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