CX289804

Overview
NameCX289804
Unique NameCX289804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KIF5C_HUMAN (Kinesin heavy chain isoform 5C OS=Homo sapiens GN=KIF5C PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.478e-31
Identity = 80/187 (42.78%), Postives = 114/187 (60.96%), Query Frame = 1
Query:   13 EVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLKQDEKETKKLQDNL 570
            EV +++  G   R V  TN NE SSRSH +  + +K EN+   +K    L+LVDLAGSE+V K   +G  L E++ INKSLSALG+VISALA     H+PYR+SK+T ILQ SLGG+C+T + +  SPS  +  ET  +L F  R + I++  +      +E  ++K+  EK K+  K  K +  +L
Sbjct:  179 EVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAE--EWKKKYEKEKEKNKTLKNVIQHL 363          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KLP1_SCHPO (Kinesin-like protein 1 OS=Schizosaccharomyces pombe GN=klp1 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 8.461e-31
Identity = 77/157 (49.04%), Postives = 99/157 (63.06%), Query Frame = 1
Query:   16 VWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKS-------GHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESG 465
            V+++L      R + +T ANE SSRSH +  + + GEN    Q  K  L LVDLAGSER+   +  G+RL+E+Q INKSLS LGDVI AL + S        HIPYRNSKLT++L+ SLG   KTLMFV +SP  S   +TL SL FA++V   + G
Sbjct:  669 VYKMLNRAGENRFIAATKANERSSRSHTVFMLYIDGENSRTKQICKGTLNLVDLAGSERLSYSQAVGDRLRETQAINKSLSCLGDVIHALGNASNSTTKEKSHIPYRNSKLTYLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVNDTKVG 825          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KINH_LOLPE (Kinesin heavy chain OS=Loligo pealeii PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.461e-31
Identity = 81/189 (42.86%), Postives = 116/189 (61.38%), Query Frame = 1
Query:   13 EVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISELFK--YKQMAEKLKQDEKETKKLQDNL 570
            EV E++  G   R V  TN NE SSRSH +  + VK EN+   +K    L+LVDLAGSE+V K   +G  L E++ INKSLSALG+VISALA     H+PYR+SKLT ILQ SLGG+ +T M +  SP+S +  ET  +L F  R + I++  +  +   ++ +K  Y++  E++ + +    KL+  L
Sbjct:  178 EVMEVIDEGKNNRHVAVTNMNEHSSRSHSVFLINVKQENVETQKKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALADGNKSHVPYRDSKLTRILQESLGGNARTTMVICCSPASYNESETKSTLLFGQRAKTIKNVVSVNEELTADEWKRRYEKEKERVTKLKATMAKLEAEL 366          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KIF7_HUMAN (Kinesin-like protein KIF7 OS=Homo sapiens GN=KIF7 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.105e-30
Identity = 82/164 (50.00%), Postives = 100/164 (60.98%), Query Frame = 1
Query:    4 GTREVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLIN--------GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS---KSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIES 462
            G  EV  LL+ G   R  G+T+ N LSSRSH +  VT++              GQ   S    VDLAGSERV K    GERLKES  IN SL ALG+VISAL     +  HIPYR+SK+T IL+ SLGG+ KT+M   +SPSSSD  ETL +LN+ASR + I +
Sbjct:  188 GLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQNIRN 351          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KINH_STRPU (Kinesin heavy chain OS=Strongylocentrotus purpuratus PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.443e-30
Identity = 78/183 (42.62%), Postives = 111/183 (60.66%), Query Frame = 1
Query:   13 EVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLKQDEKETKKL 558
            EV ++++ G   R +  TN NE SSRSH +  + VK EN+   +K    L+LVDLAGSE+V K   +G  L E++ INKSLSALG+VISALA  K  HIPYR+SK+T ILQ SLGG+ +T + +  SPSS +  E+  +L F  R + I++         +E ++ +   EK K    + + L
Sbjct:  177 EVMDVIEEGKSNRHIAVTNMNEHSSRSHSIFLIQVKQENMETKKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGKKSHIPYRDSKMTRILQESLGGNARTTIVICCSPSSFNESESKSTLMFGQRAKTIKNTVTVNMELTAEEWRNRYEKEKEKNGRLKAQLL 359          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KIF3A_PONAB (Kinesin-like protein KIF3A OS=Pongo abelii GN=KIF3A PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.885e-30
Identity = 82/184 (44.57%), Postives = 118/184 (64.13%), Query Frame = 1
Query:   25 LLKSGARVRSVGSTNANELSSRSHCLLRVTVK-GENLINGQK--TKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS-KSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISE--LFKYKQMAEKLKQDEKETKKL 558
            ++  G + RSVG+TN NE SSRSH +  +T++  E  I+G        L LVDLAGSER  K    G+RLKE+  IN SLS LG+VISAL   KS H+PYRNSKLT +LQ SLGG+ KT+M   I P+  +  ET+ +L +A+R + I++  AR   D  +  L ++++  E+LK+  +E +++
Sbjct:  198 IMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGIDGNMHVRMGKLHLVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKN-KARINEDPKDALLRQFQKEIEELKKKLEEGEEI 380          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KIF3A_MACFA (Kinesin-like protein KIF3A OS=Macaca fascicularis GN=KIF3A PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.885e-30
Identity = 82/184 (44.57%), Postives = 118/184 (64.13%), Query Frame = 1
Query:   25 LLKSGARVRSVGSTNANELSSRSHCLLRVTVK-GENLINGQK--TKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS-KSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISE--LFKYKQMAEKLKQDEKETKKL 558
            ++  G + RSVG+TN NE SSRSH +  +T++  E  I+G        L LVDLAGSER  K    G+RLKE+  IN SLS LG+VISAL   KS H+PYRNSKLT +LQ SLGG+ KT+M   I P+  +  ET+ +L +A+R + I++  AR   D  +  L ++++  E+LK+  +E +++
Sbjct:  198 IMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGIDGNMHVRMGKLHLVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKN-KARINEDPKDALLRQFQKEIEELKKKLEEGEEI 380          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KIF3A_HUMAN (Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3A PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 1.885e-30
Identity = 82/184 (44.57%), Postives = 118/184 (64.13%), Query Frame = 1
Query:   25 LLKSGARVRSVGSTNANELSSRSHCLLRVTVK-GENLINGQK--TKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS-KSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISE--LFKYKQMAEKLKQDEKETKKL 558
            ++  G + RSVG+TN NE SSRSH +  +T++  E  I+G        L LVDLAGSER  K    G+RLKE+  IN SLS LG+VISAL   KS H+PYRNSKLT +LQ SLGG+ KT+M   I P+  +  ET+ +L +A+R + I++  AR   D  +  L ++++  E+LK+  +E +++
Sbjct:  198 IMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGIDGNMHVRMGKLHLVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKN-KARINEDPKDALLRQFQKEIEELKKKLEEGEEI 380          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: OSM3_CAEEL (Osmotic avoidance abnormal protein 3 OS=Caenorhabditis elegans GN=osm-3 PE=2 SV=4)

HSP 1 Score: 131.724 bits (330), Expect = 2.462e-30
Identity = 82/172 (47.67%), Postives = 107/172 (62.21%), Query Frame = 1
Query:   22 ELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS-KSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISELFK-YKQMAEKLK 531
            EL+  G   R VG+T  N+ SSRSH +  V V+G     G      L LVDLAGSER  K    G+RLKE+  IN SLSALG+VISAL   KS HIPYR+SKLT +LQ SLGG+ KT+M   +SPSS +  ETL +L +A+R + I++ P   +     L + Y++   +LK
Sbjct:  183 ELMTRGFNNRHVGATLMNKDSSRSHSIFTVYVEGMTE-TGSIRMGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSKHIPYRDSKLTRLLQDSLGGNTKTIMIACVSPSSDNYDETLSTLRYANRAKNIKNKPTINEDPKDALLREYQEEIARLK 353          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KIFC1_CRIGR (Kinesin-like protein KIFC1 OS=Cricetulus griseus PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.215e-30
Identity = 80/159 (50.31%), Postives = 103/159 (64.78%), Query Frame = 1
Query:   10 REVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERV--GKIEVDGER--LKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPAR 474
            REV  LL    + R+V  T  NE SSRSH + ++ + GE+   G +  + L LVDLAGSER+  G     GER  L+E+Q IN SLS LG VI AL++K  H+PYRNSKLT++LQ+SLGG  K LMFV ISP   ++ E+L SL FAS+V     G A+
Sbjct:  460 REVEALLHLAHQNRAVARTAQNERSSRSHSVFQLQISGEHAARGLQCVAPLNLVDLAGSERLDPGLTLGPGERDRLRETQSINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQCVIGTAQ 618          
The following BLAST results are available for this feature:
BLAST of CX289804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
KIF5C_HUMAN6.478e-3142.78Kinesin heavy chain isoform 5C OS=Homo sapiens GN=... [more]
KLP1_SCHPO8.461e-3149.04Kinesin-like protein 1 OS=Schizosaccharomyces pomb... [more]
KINH_LOLPE8.461e-3142.86Kinesin heavy chain OS=Loligo pealeii PE=2 SV=1[more]
KIF7_HUMAN1.105e-3050.00Kinesin-like protein KIF7 OS=Homo sapiens GN=KIF7 ... [more]
KINH_STRPU1.443e-3042.62Kinesin heavy chain OS=Strongylocentrotus purpurat... [more]
KIF3A_PONAB1.885e-3044.57Kinesin-like protein KIF3A OS=Pongo abelii GN=KIF3... [more]
KIF3A_MACFA1.885e-3044.57Kinesin-like protein KIF3A OS=Macaca fascicularis ... [more]
KIF3A_HUMAN1.885e-3044.57Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3... [more]
OSM3_CAEEL2.462e-3047.67Osmotic avoidance abnormal protein 3 OS=Caenorhabd... [more]
KIFC1_CRIGR3.215e-3050.31Kinesin-like protein KIFC1 OS=Cricetulus griseus P... [more]

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Properties
Property NameValue
Genbank descriptionC02017C11SK IF1 Citrus clementina cDNA clone C02017C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289804 ID=CX289804; Name=CX289804; organism=Citrus clementina; type=EST; length=572bp
TTCGGCACGAGGGAAGTGTGGGAGCTACTTAAGTCTGGAGCCAGAGTTAG
ATCTGTTGGATCCACCAATGCCAATGAGCTCAGTAGCCGGTCTCACTGCT
TGTTGCGAGTAACTGTGAAGGGGGAGAATCTGATAAATGGGCAGAAGACT
AAGAGTCACCTCTGGCTGGTAGACTTGGCAGGCAGTGAACGTGTGGGGAA
GATTGAAGTTGATGGTGAGAGGTTGAAGGAATCTCAGTTTATAAATAAAT
CTCTCTCTGCACTTGGTGATGTTATATCTGCTCTGGCATCTAAATCAGGC
CACATTCCGTACAGGAACTCGAAGCTCACTCATATTTTGCAGAGCTCTCT
AGGTGGAGATTGCAAGACTCTGATGTTTGTCCAGATCAGCCCAAGTTCTT
CAGACCTTGGAGAGACCCTTTGTTCACTGAATTTTGCCAGCCGAGTTCGG
GGAATTGAAAGTGGTCCTGCTCGGAAACAATCAGACATTTCTGAACTTTT
TAAGTACAAGCAAATGGCAGAAAAGTTAAAGCAGGATGAGAAGGAGACGA
AGAAGTTGCAGGACAATTTGCA
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