CX289806

Overview
NameCX289806
Unique NameCX289806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289806 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.998e-29
Identity = 75/184 (40.76%), Postives = 121/184 (65.76%), Query Frame = 3
Query:    3 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS--GRRLWDPKHE---NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYL-KFVLRQQEIARQQQE 524
            GRG++++KRIEN  NRQVT+SKRR G+LKKA EI+VLCDA+V+L++++  GK+ +Y S  + +  ILE+Y R S   R+L  P+ +   N S E  R+K + + ++   RH  GED+ +++PKEL  LE  L+  L  IR +++    E +  ++K  K ++E+++ L K +  +++I R QQE
Sbjct:    2 GRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEY-STDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILRAQQE 184          
BLAST of CX289806 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.812e-29
Identity = 78/184 (42.39%), Postives = 118/184 (64.13%), Query Frame = 3
Query:    3 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS--GRRLWDPKHE---NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYL--KFVLRQQEIARQQQ 521
            GRGK+++KRIEN  NRQVT+SKRRNG+LKKA EI+VLCDA+V+ I+++  GK+++Y + S  +  ILE+Y R S   + L   + E   N  +E  ++K + + +Q   +HL GED+ SLN KEL  LE  LE+ L  I  ++S    E +  ++K  + ++EE+  L  + V RQ+ +  QQQ
Sbjct:    2 GRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDS-RMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQKELVERQKNVRGQQQ 184          
BLAST of CX289806 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 74/184 (40.22%), Postives = 115/184 (62.50%), Query Frame = 3
Query:    3 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS--GRRLWDPKHE---NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM-----ETMRKNGKMMEEEHNYLKFVLRQQEIARQQQE 524
            GRG++++KRIEN  NRQVT+SKRR G+LKKA EI+VLCDA+V+L++++  GK+ +Y S  + +  ILE+Y R S   R+L  P+ +   N S E  R+K + + ++   RH  GED+ +++ KEL  LE  L+  L  IR ++++ M     E  RK   + E+     K +  +++I R QQE
Sbjct:    2 GRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEY-STDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREKILRAQQE 184          
BLAST of CX289806 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 74/184 (40.22%), Postives = 119/184 (64.67%), Query Frame = 3
Query:    3 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS--GRRLWDPKHENLSN---EIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYL--KFVLRQQEIARQQQ 521
            GRG++++KRIEN  NRQVT+SKRR+G+LKKA EI+VLCDA+V LI++++ GK+ +Y + S  +  +LE+Y R S   R+L    H +  +   E  ++K   + +Q   +H  GED+ SLN KEL  LE  L++ L  IR +++    E +  ++K  + ++E++N L  K   R++E+A+Q Q
Sbjct:    2 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDS-CMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVAQQNQ 184          
BLAST of CX289806 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.426e-28
Identity = 80/225 (35.56%), Postives = 130/225 (57.78%), Query Frame = 3
Query:    3 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDP-----KHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLR--------QQEIARQQQELAMENSVSAEIDYQRENHHDYAY-HVQPIQPNLQ 623
            GRGKIEIKRIEN +NRQVT+ KRRNG+LKKA E++VLCDA+V+L+I+++ G++++Y   + S+   +E+Y +     +  P       +    E  +++R+   +Q   RH+ GE + SLN KEL  LE  LE G+  +R K++E    ++E M+K    ++  + YL+  +         QQE +  Q     E+ VS+   + +  H++  Y  V  ++PN Q
Sbjct:   17 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA--NNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESSVIQGTTVYESGVSS---HDQSQHYNRNYIPVNLLEPNQQ 236          
BLAST of CX289806 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 76/212 (35.85%), Postives = 124/212 (58.49%), Query Frame = 3
Query:    3 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR--QSGRRLWDPKHENLSNEIE------RIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHDYAYHVQ 602
            GRG++E+KRIEN  NRQVT++KRRNG+LKKA E++VLCDA+V+LII+++ GK++++CS S+S++  LE+Y +          P  E L+ E+       ++K   D +Q   R+L GED+  L+ KEL +LE  L++ L  IR  ++    +++  ++   +M+ E +  L+       +A   Q     N    E+D+   +HH    H Q
Sbjct:    2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRL-----RLADGYQMPLQLNPNQEEVDHYGRHHHQQQQHSQ 207          
BLAST of CX289806 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 78/219 (35.62%), Postives = 126/219 (57.53%), Query Frame = 3
Query:    3 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIE-------RIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHDYA-YHVQPIQPNLQ 623
            GRG++E+K IEN  NRQVT++KRR  +LKKA E++VLCDA+V+LII+++ GK++++CS STS++  LE+Y + +      P+   +S E +       ++K   + +Q   R+L GED+  L  KEL  LE  L++ L  IR  ++    +++  +++  +M+ E +  LK    +   A QQQ     N+ +     Q   HH  A YH    +P LQ
Sbjct:    2 GRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-STSMLKTLEKYQKCN---FGSPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQ 216          
BLAST of CX289806 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 73/196 (37.24%), Postives = 123/196 (62.76%), Query Frame = 3
Query:    3 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS--GRRLWDPKHE---NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDY 563
            GRG++++KRIEN  NRQVT+SKRR+G+LKKA EI+VLCDA+V LI++++ GK+ +Y + S  +  ILE+Y R S   ++L    H    + + E  ++K   + +Q   +H  GED+ SL+ KEL  LE  L++ L  IR +++    E +  ++K  + ++E++N L   ++++E + QQ      +S+ A  D+
Sbjct:    2 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDS-CMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKEREKSAQQISGINSSSLFAHTDF 196          
BLAST of CX289806 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27
Identity = 68/197 (34.52%), Postives = 120/197 (60.91%), Query Frame = 3
Query:    3 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR-----QSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQ 566
            GRGKIEIKRIEN +NRQVT+ KRRNG+LKKA E++VLCDA+V+LI+++S G++++Y + S      +E+Y +      +   + +   +    E  +++ +   +Q + R++ GE +++L+ ++L  LE  +E G+  IR K++E    ++E M+K    +   + YL+  + + E A+QQQ+    N +     Y+
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKAT--IERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYE 212          
BLAST of CX289806 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27
Identity = 77/217 (35.48%), Postives = 126/217 (58.06%), Query Frame = 3
Query:    3 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDP-----KHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHDYAYHVQPIQPNLQE 626
            GRGKIEIKRIEN +NRQVT+ KRRNG+LKKA E++VLCDA+V+L+I+++ G++++Y   + S+   +E+Y +     +  P       +    E  +++R+   +Q   RH+ GE + SLN KEL  LE  LE G+  +R K+ E    ++E M+K    ++ ++ YL+  + ++    QQQE ++ +  +        +H    Y+   I  NL E
Sbjct:   17 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA--NNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITER-TGLQQQESSVIHQGTVYESGVTSSHQSGQYNRNYIAVNLLE 230          
The following BLAST results are available for this feature:
BLAST of CX289806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
AP1_ARATH1.998e-2940.76Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
MAD15_ORYSJ5.812e-2942.39MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AP1_SINAL1.691e-2840.22Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AGL8_SOLTU2.209e-2840.22Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL1_ARATH6.426e-2835.56Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
SEP3_ARATH8.393e-2835.85Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_ARADE8.393e-2835.62Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL8_SOLLC8.393e-2837.24Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AG_TOBAC1.432e-2734.52Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AGL5_ARATH1.432e-2735.48Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC02017D01SK IF1 Citrus clementina cDNA clone C02017D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289806 ID=CX289806; Name=CX289806; organism=Citrus clementina; type=EST; length=743bp
GGGGAAGAGGCAAGATTGAGATCAAGAGAATAGAGAACGCAAGCAACAGG
CAGGTGACTTATTCAAAGAGAAGAAATGGAATCCTCAAGAAGGCAAAGGA
GATCACTGTGCTGTGTGATGCTAAAGTTTCTCTCATCATTTACGCTAGCT
CTGGCAAGATGCACGATTACTGTAGCCCTTCTACTTCGTTGGTTGATATT
TTGGAGCAATATCACCGGCAGTCAGGGAGGAGATTGTGGGATCCCAAGCA
TGAGAACCTCAGCAATGAAATTGAAAGAATCAAGAGAGAGAATGATAGAA
TGCAGATCAAGCTCAGGCACCTAAATGGGGAGGATATCTCATCTCTGAAC
CCTAAAGAACTCATAGCCTTAGAGGATGCCCTCGAAAATGGTCTTGTCAG
CATCCGCGACAAACAGAGTGAAAAGATGGAAACGATGAGGAAAAATGGAA
AAATGATGGAGGAGGAGCATAATTACCTCAAATTTGTTCTGAGGCAACAG
GAGATTGCGAGACAGCAACAGGAGCTTGCTATGGAGAATAGTGTGAGTGC
TGAGATTGATTATCAAAGAGAGAATCATCATGACTATGCCTACCATGTGC
AGCCTATTCAGCCTAATCTTCAAGAAAGGATCTAATAGCACTTTCGGATT
CCTTTCTTGAAAGCACTTTAACATTTTAGGTTCTGTGATGGAATTAGTGA
CCTCGATATATATTAATGAATTTACCTCGTTATAGTTGTTTGA
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