CX289858

Overview
NameCX289858
Unique NameCX289858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: AB2G_ARATH (ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 42/183 (22.95%), Postives = 82/183 (44.81%), Query Frame = 3
Query:   15 GLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQ 563
            G++   +F +     K  Q+    F       F+         + V   ER +F RE A   Y   +Y  SQ +I +  +   +  +    +  +G    A  FF+F + ++ SF   + +   +  + P   +G  +    L+ + LFSGF I R +IP++W W++++S V +   G++ ++
Sbjct:  480 GIILATMFTNLDNSPKGAQERLGFFAFAMSTTFY----TCAEAIPVFLQERYIFMRETAYNAYRRSSYVLSQSIISIPALIVLSASFAATTFWAVGLDGGANGFFFFYFTILASFWAGSSFVTFLSGVIPNVMLGFTVVVAILAYFLLFSGFFISRDRIPVYWLWFHYISLVKYPYEGVLQNE 658          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: ABCGL_DICDI (ABC transporter G family member 21 OS=Dictyostelium discoideum GN=abcG21 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 39/188 (20.74%), Postives = 90/188 (47.87%), Query Frame = 3
Query:   12 EGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDI 575
            +  ++G IF+   Q  K    L    GA++ A+ F  +  + + + +    R +  ++R+  MY   A   +Q++ ++     Q  ++ +++Y M G  + A +FF F + ++ + +  T    +    +P+  I   +    L     + G+ IP+ ++  W+ W+YW +P ++    L+ ++ GD+
Sbjct:  504 QSFVYGSIFF---QMEKTIPGLFTRGGAIFSAILF-NAFLSEAELPLTMYGRRILQKQRSYAMYRPSALHIAQIVTDIPLTMIQVFLFSIVVYFMFGLQYNAGKFFIFCFTLVGATLATTNLFRVFGNFSPSLYISQNVMNVILIFMITYCGYTIPKPKMHPWFAWFYWANPFSYAFKALMANEFGDL 687          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: ABCG3_DICDI (ABC transporter G family member 3 OS=Dictyostelium discoideum GN=abcG3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 46/177 (25.99%), Postives = 81/177 (45.76%), Query Frame = 3
Query:   66 QQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFA-----WKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEG 581
            Q   +N    ++    F G  +   V ++V  +R+V+YRE +AG Y    Y  + V+ +L  +      Y + ++ + G       WK   FF+ L + ++  M +     +     P   I  ++SG  L+   LF GF IP   IP  W W ++L    ++ YGL T  + +++G
Sbjct: 1148 QTGARNRIALVFLGFLFGGMASIGKVPTIVE-DRSVYYRESSAGTYPAHLYILASVITDLPMMVLTAFSYWIPMFFLTGLTLGDHGWK---FFFSLSVYLLVIMCYDSLATLFALTLPTIPIAILVSGVGLNFLGLFGGFFIPVNNIPRGWIWMHYL---VFSKYGLETLSITELKG 1317          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: ABCGJ_DICDI (ABC transporter G family member 19 OS=Dictyostelium discoideum GN=abcG19 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 38/191 (19.90%), Postives = 91/191 (47.64%), Query Frame = 3
Query:   12 EGLLFGLIFWDKGQKTKKQQDLQNLF---GALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDI 575
            +  ++G IF++       + ++  LF   G L+  + F  +      M +   +R +  ++ +  MY   A   +Q++ ++     Q  ++ +++Y M G  + A +FF F + ++ + +  T    M    +P+  I   +   F+     ++G+ IP+ ++  W+ W+YW +P ++    L+ ++ GD+
Sbjct:  504 QSFVYGSIFYNL------ETNINGLFTRGGTLFSVILF-NALLCECEMPLTFGQRGILQKQHSYAMYRPSALHIAQIVTDIPLTIIQVFLFSIVVYFMFGLQYDAGKFFIFCFTLVGATLATTNLFRMFGNFSPSLYISQNVMNIFIISMITYTGYTIPKPKMHPWFSWFYWCNPFSYAFKALMANEFGDL 687          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 44/187 (23.53%), Postives = 81/187 (43.32%), Query Frame = 3
Query:   18 LLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIE 578
            ++FG +FW  G   K Q  +Q+  G L  A            + V   ER +  RER+ G YS   Y  S+ + E+   A   +++  +LY M        RF  F  +V +     +  G+ + A+ P+ +    +    ++++ +F G+ +     PI +RW    S + W   GL  ++   ++
Sbjct:  424 VIFGSVFWRMG---KSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLYPMARLNPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRASLIRWAFQGLCINEFSGLK 607          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: AB1G_ARATH (ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 40/186 (21.51%), Postives = 79/186 (42.47%), Query Frame = 3
Query:   15 GLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGD 572
            G +   +FW      K  Q+    F      +F+         + V   ER +F RE A   Y   +Y  S  ++    + F +V +    Y  +G         ++  +++ SF   + +   +  + P+  +G  +    L+ + LFSGF I R +IP +W W++++S V +    ++ ++  D
Sbjct:  465 GFILATVFWRLDNSPKGVQERLGFFAFAMSTMFY----TCADALPVFLQERYIFMRETAYNAYRRSSYVLSHAIVSFPSLIFLSVAFAATTYWAVGLDGGLTGLLFYCLIILASFWSGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFINRNRIPDYWIWFHYMSLVKYPYEAVLQNEFSD 646          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: AB16G_ARATH (ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 40/186 (21.51%), Postives = 80/186 (43.01%), Query Frame = 3
Query:   15 GLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGD 572
            G +   +FW      K  Q+    F      +F+         + V   ER +F RE A   Y   +Y  S  ++    + F ++ + +  +  +G       F ++  +++ SF   + +   +  + P   +G  +    L+ + LFSGF I R +IP +W W+++LS V +    ++ ++  D
Sbjct:  461 GFILATVFWRLDNSPKGVQERLGFFAFAMSTMFY----TCADALPVFLQERYIFMRETAYNAYRRSSYVLSHAIVTFPSLIFLSLAFAVTTFWAVGLEGGLMGFLFYCLIILASFWSGSSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPQYWIWFHYLSLVKYPYEAVLQNEFSD 642          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: AB18G_ARATH (ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11
Identity = 45/213 (21.13%), Postives = 95/213 (44.60%), Query Frame = 3
Query:   15 GLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGD-----IEGNVEIPGSTATMTVKQLLKI 638
            GLL   ++W      +  Q+    F      +F+  + N    + V   ER +F RE     Y T +Y  S  L+ L  +   ++ +    +  +G +   + FF++  ++  +F   +     I  L P   +  +++  +LS   L  GF I R +IP++W W++++S + +    ++ ++  D     ++G V++   T    V  ++K+
Sbjct:  433 GLLLATVYWRLDNTPRGAQERMGFFAFGMSTMFYCCADN----IPVFIQERYIFLRETTHNAYRTSSYVISHALVSLPQLLALSIAFAATTFWTVGLSGGLESFFYYCLIIYAAFWSGSSIVTFISGLIPNVMMSYMVTIAYLSYCLLLGGFYINRDRIPLYWIWFHYISLLKYPYEAVLINEFDDPSRCFVKG-VQVFDGTLLAEVSHVMKV 640          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: ABCGE_DICDI (ABC transporter G family member 14 OS=Dictyostelium discoideum GN=abcG14 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 47/188 (25.00%), Postives = 86/188 (45.74%), Query Frame = 3
Query:   15 GLLFGLIFWD-KGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKR----FFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWR-WYYWLSPVAWTLYGLVTS 560
            GL+ G  FW+ +G  +   Q +  +F AL   +  +       VM  + ++R  F R+ A+  YS   +A S V++EL ++     ++    +   G    +      +FWF++++ + F     +G  + A+         L    +    LFSG + P   IP +WR W Y L+P  + + G+VT+
Sbjct: 1154 GLIIGFTFWNLQGSSSDMNQRIFFIFEALMLGILLIFV-----VMPQLISQREYFKRDFASKFYSWFPFAISIVVVELPFIVISGTIFFFCSFWTAGLDKTSDSEQTFYFWFIFVIFLFFC--VSFGQAVAAVCINMFFAMTLIPLLIVFLFLFSGVMTPPSSIPTFWRGWVYHLNPCRYFMEGIVTN 1334          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: ABCGO_DICDI (ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 52/190 (27.37%), Postives = 87/190 (45.79%), Query Frame = 3
Query:   15 GLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYV-AFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEG 581
            GL  G +FW        +   QN FGA++     L   +  S + +   +R +F RERA G Y T AY  ++V+ ++I +     ++   I Y M+G       F +FL  ++++    +   M I  ++P      ++S   L ++ LF GFL+ R  IP +     W+S   +  YGL    V +  G
Sbjct:  915 GLTLGYLFWKL--PANLEPGCQNRFGAMFFMTALLSFGSITS-LDLFYNDRIIFIRERANGFYRTSAYFLAKVVTDIIPMRVIPPIILGSICYYMIGLRPGILHFIYFLISLVLTSTVASSMCMAISTISPTFGTANMVSILLLFVFLLFDGFLLARSSIPKYLIGLVWIS---FMSYGLEIPVVNEFNG 1098          
The following BLAST results are available for this feature:
BLAST of CX289858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
AB2G_ARATH4.906e-1222.95ABC transporter G family member 2 OS=Arabidopsis t... [more]
ABCGL_DICDI6.407e-1220.74ABC transporter G family member 21 OS=Dictyosteliu... [more]
ABCG3_DICDI6.407e-1225.99ABC transporter G family member 3 OS=Dictyostelium... [more]
ABCGJ_DICDI8.368e-1219.90ABC transporter G family member 19 OS=Dictyosteliu... [more]
AB7G_ARATH1.093e-1123.53ABC transporter G family member 7 OS=Arabidopsis t... [more]
AB1G_ARATH1.427e-1121.51ABC transporter G family member 1 OS=Arabidopsis t... [more]
AB16G_ARATH1.427e-1121.51ABC transporter G family member 16 OS=Arabidopsis ... [more]
AB18G_ARATH1.864e-1121.13ABC transporter G family member 18 OS=Arabidopsis ... [more]
ABCGE_DICDI2.435e-1125.00ABC transporter G family member 14 OS=Dictyosteliu... [more]
ABCGO_DICDI3.180e-1127.37ABC transporter G family member 24 OS=Dictyosteliu... [more]

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Properties
Property NameValue
Genbank descriptionC02017H05SK IF1 Citrus clementina cDNA clone C02017H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289858 ID=CX289858; Name=CX289858; organism=Citrus clementina; type=EST; length=742bp
GAATTCGGCACGAGGGTCTTCTGTTTGGTCTTATCTTCTGGGACAAAGGA
CAGAAGACAAAGAAGCAACAAGATCTTCAGAATCTTTTCGGAGCTTTGTA
CTGTGCTGTGTTTTTCCTTGGATCCACCAATGCAAACTCAGTAATGTCCG
TAGTCTCCACGGAGAGAACAGTTTTCTACCGCGAAAGAGCTGCTGGAATG
TACTCTACACTAGCTTACGCTTTTTCGCAGGTGCTTATAGAGTTGATATA
TGTGGCATTTCAAACTGTCGTGTATGTTCTGATCCTATACTCCATGATGG
GATTTGCGTGGAAAGCAAAAAGATTCTTCTGGTTCTTGTACATGGTAATG
ATGTCCTTTATGCAATTCACATTGTATGGGATGATGATTGTCGCACTGAC
TCCAGCTCCGCAAATTGGTGCCATACTTTCCGGATTCTTCCTCTCCCTGT
GGAATTTGTTCTCTGGTTTTCTCATTCCTCGCGTGCAAATCCCAATTTGG
TGGAGGTGGTACTACTGGCTCTCTCCCGTTGCTTGGACACTCTATGGCCT
TGTTACAAGTCAAGTTGGTGACATAGAAGGCAACGTGGAAATTCCGGGAA
GCACCGCTACGATGACAGTGAAGCAGCTTCTAAAGATAGTTTCGGGTTCA
AGTATGACTTCCCTTCCGTTGTTGCTGTAGTCAAACTTGTCTGGCTTCTC
GCCTTCGTCTTTGTGTTTACCCTTGCCATCACCTTATTAACT
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