CX289862

Overview
NameCX289862
Unique NameCX289862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_BOVIN (60S ribosomal protein L18 OS=Bos taurus GN=RPL18 PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.231e-28
Identity = 61/88 (69.32%), Postives = 70/88 (79.55%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 265
            V ALR +  AR+RI KAGG+ LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG+R SRG++
Sbjct:  100 VCALRVSSRARSRILKAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18B_XENLA (60S ribosomal protein L18-B OS=Xenopus laevis GN=rpl18-B PE=2 SV=4)

HSP 1 Score: 125.561 bits (314), Expect = 2.100e-28
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 265
            V AL+ T   R+RI K+GG+ +TFDQLAL AP GQNTVLL GP+ ARE  +HFG APG PHS TKPYV SKGRKFERARG+R SRG++
Sbjct:  100 VCALKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLSKGRKFERARGRRASRGYK 187          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18B_SCHPO (60S ribosomal protein L18-B OS=Schizosaccharomyces pombe GN=rpl18b PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.677e-28
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 268
            V ALRFT++ARARI KAGGE LT DQLALRAP G NTVLLRG K+AREA +HFG     PH H  PYVRS+GRKFERARG+R SR F+V
Sbjct:  102 VAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGRRKSRAFKV 187          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.361e-27
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 268
            + ALRFT++ARARI KAGGE LT DQLALRAP G NTVL+RG K+AREA +HFG     PH H  PYVRS+GRKFERARG+R SR F+V
Sbjct:  102 IAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGRRKSRAFKV 187          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_AEDAE (60S ribosomal protein L18 OS=Aedes aegypti GN=RpL18 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.171e-27
Identity = 59/88 (67.05%), Postives = 72/88 (81.82%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 265
            V ALR TE AR RI K GG+  TFDQLAL AP G+NTVL++G + AREA  HFG APGVPHS+T+PYV+SKGRK+E+ARG+R+S GF+
Sbjct:  101 VCALRVTEKARERILKWGGKIYTFDQLALVAPTGKNTVLMQGERTAREAFTHFGRAPGVPHSNTRPYVQSKGRKYEKARGRRSSCGFK 188          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_ANOGA (60S ribosomal protein L18 OS=Anopheles gambiae GN=RpL18 PE=3 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 8.821e-27
Identity = 57/88 (64.77%), Postives = 72/88 (81.82%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 265
            V ALR T+ AR RI K GG+  TFDQLAL +P G+NTVL++G + ARE  KHFG APGVPHS+T+PYV+SKGRKFE+ARG+R+S G++
Sbjct:  101 VCALRVTDKARQRILKNGGKIYTFDQLALLSPTGRNTVLMQGKRTAREVFKHFGRAPGVPHSNTRPYVQSKGRKFEKARGRRSSCGYK 188          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.567e-26
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 268
            V ALRFT  ARA+I KAGGEC+T DQLA+RAP GQNT++LRGP+N+REAV+HFG     PH    P + S GRKFERARG+R S+GF+V
Sbjct:  101 VAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFERARGRRRSKGFKV 186          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_SPOFR (60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.718e-26
Identity = 61/84 (72.62%), Postives = 66/84 (78.57%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNS 253
            V AL  TE ARARI  AGGE LTFDQLALRAP G  TVLL+G +NAREAV+HFGPAPG P SHTKPYVR+KG   ERAR +R S
Sbjct:  100 VAALHVTEKARARILAAGGEILTFDQLALRAPTGAKTVLLQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--ERARPRRRS 181          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_PLUXY (60S ribosomal protein L18 OS=Plutella xylostella GN=RpL18 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.173e-25
Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNS 253
            V AL  TE ARARI  AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P SHTKPYVRSKG   E+A+  R S
Sbjct:  100 VAALHVTEKARARILDAGGEILTFDQLALRAPTGRKTVLIQGQRNAREAVRHFGPAPGAPRSHTKPYVRSKGH--EQAKPSRRS 181          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_BOMMO (60S ribosomal protein L18 OS=Bombyx mori GN=RpL18 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNS 253
            V AL  TE ARARI  AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P SHTKPYVR+KG   E+AR  R +
Sbjct:  100 VAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 181          
The following BLAST results are available for this feature:
BLAST of CX289862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL18_BOVIN1.231e-2869.3260S ribosomal protein L18 OS=Bos taurus GN=RPL18 P... [more]
RL18B_XENLA2.100e-2868.1860S ribosomal protein L18-B OS=Xenopus laevis GN=r... [more]
RL18B_SCHPO4.677e-2871.9160S ribosomal protein L18-B OS=Schizosaccharomyces... [more]
RL18A_SCHPO1.361e-2769.6660S ribosomal protein L18-A OS=Schizosaccharomyces... [more]
RL18_AEDAE5.171e-2767.0560S ribosomal protein L18 OS=Aedes aegypti GN=RpL1... [more]
RL18_ANOGA8.821e-2764.7760S ribosomal protein L18 OS=Anopheles gambiae GN=... [more]
RL18_YEAST2.567e-2665.1760S ribosomal protein L18 OS=Saccharomyces cerevis... [more]
RL18_SPOFR5.718e-2672.6260S ribosomal protein L18 OS=Spodoptera frugiperda... [more]
RL18_PLUXY2.173e-2570.2460S ribosomal protein L18 OS=Plutella xylostella G... [more]
RL18_BOMMO4.840e-2569.0560S ribosomal protein L18 OS=Bombyx mori GN=RpL18 ... [more]

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Properties
Property NameValue
Genbank descriptionC02017H09SK IF1 Citrus clementina cDNA clone C02017H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289862 ID=CX289862; Name=CX289862; organism=Citrus clementina; type=EST; length=626bp
GGTTACTGCACTGAGGTTCACAGAGACAGCAAGGGCAAGAATTGAGAAGG
CAGGGGGAGAATGCTTGACATTTGACCAACTGGCTCTTCGTGCTCCTTTG
GGTCAGAACACGGTTCTCCTGAGAGGTCCGAAGAATGCTCGTGAGGCTGT
CAAGCACTTTGGACCTGCTCCTGGTGTACCACACAGCCACACCAAACCCT
ATGTGCGATCTAAGGGAAGAAAATTTGAGAGGGCTAGAGGAAAAAGGAAC
AGCAGAGGCTTCAGGGTTTGAGATGCAGAACTCATTCATAAGGATACAGA
GCAGCCGACCACCTTATGCAAATGTTGTGTTTTCTTTTTTTCTCCTTGCT
ATTTTAAATCTCTTGGGACAATATCTTAGCAAGTTATATTTGGATTTTTG
GATTTTTTTTTTGTTTGAGACAGATCTTGGATGTCCTTCGGGGCTTGATG
TTTAGAAGTGAAGACAGGATGCCTCATTTAAAAGTTGCCCAAGTTCTACA
CACATACATGCATGCCTAGTTGAATTAAAATGAACCATGAGAACTGGTTT
TAGTTTTGTTGTGGATGTTGCTTTGTGCTAAATACTGCCACATTTGTCGT
AAAAAAAAAAAAAAAAAAAAAAAAAA
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